Hb_000455_100

Information

Type transcription factor
Description TF Family: WRKY
Location Contig455: 142685-145132
Sequence    

Annotation

kegg
ID rcu:RCOM_1225970
description WRKY transcription factor, putative
nr
ID XP_002524838.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q9C519
description WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1
trembl
ID B9SFR9
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1225970 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000455_100 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_000926_130 0.2286703088 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_008643_010 0.2304433939 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
4 Hb_008779_010 0.2305191896 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
5 Hb_000056_330 0.2369673535 - - unnamed protein product [Vitis vinifera]
6 Hb_002849_150 0.2601497669 - - hypothetical protein JCGZ_14367 [Jatropha curcas]
7 Hb_006683_010 0.2624897733 - - cell wall invertase [Manihot esculenta]
8 Hb_005218_040 0.2658497998 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
9 Hb_018464_060 0.2712890423 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_007072_020 0.2807465334 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
11 Hb_000500_110 0.2827515607 - - Blue copper protein precursor, putative [Ricinus communis]
12 Hb_001638_220 0.2839246168 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002675_120 0.2888970643 - - DNA-repair protein xrcc1, putative [Ricinus communis]
14 Hb_007125_010 0.2904213937 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
15 Hb_001726_030 0.2942849453 - - Ferulic acid 5-hydroxylase 1 [Theobroma cacao]
16 Hb_001101_030 0.2968981103 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
17 Hb_001956_030 0.3001830116 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]
18 Hb_007894_250 0.3096920991 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
19 Hb_004800_170 0.3098682926 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
20 Hb_183623_010 0.310614265 - - aldo-keto reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000455_100 Hb_000455_100 Hb_000926_130 Hb_000926_130 Hb_000455_100--Hb_000926_130 Hb_008643_010 Hb_008643_010 Hb_000455_100--Hb_008643_010 Hb_008779_010 Hb_008779_010 Hb_000455_100--Hb_008779_010 Hb_000056_330 Hb_000056_330 Hb_000455_100--Hb_000056_330 Hb_002849_150 Hb_002849_150 Hb_000455_100--Hb_002849_150 Hb_006683_010 Hb_006683_010 Hb_000455_100--Hb_006683_010 Hb_000926_130--Hb_000056_330 Hb_007894_250 Hb_007894_250 Hb_000926_130--Hb_007894_250 Hb_007072_020 Hb_007072_020 Hb_000926_130--Hb_007072_020 Hb_000500_110 Hb_000500_110 Hb_000926_130--Hb_000500_110 Hb_003096_050 Hb_003096_050 Hb_000926_130--Hb_003096_050 Hb_001190_060 Hb_001190_060 Hb_000926_130--Hb_001190_060 Hb_008643_010--Hb_008779_010 Hb_001638_220 Hb_001638_220 Hb_008643_010--Hb_001638_220 Hb_054362_010 Hb_054362_010 Hb_008643_010--Hb_054362_010 Hb_008643_010--Hb_006683_010 Hb_127993_010 Hb_127993_010 Hb_008643_010--Hb_127993_010 Hb_008779_010--Hb_001638_220 Hb_008779_010--Hb_054362_010 Hb_008779_010--Hb_006683_010 Hb_008779_010--Hb_127993_010 Hb_000056_330--Hb_007894_250 Hb_000056_330--Hb_003096_050 Hb_000056_330--Hb_001190_060 Hb_000056_330--Hb_007072_020 Hb_000975_150 Hb_000975_150 Hb_000056_330--Hb_000975_150 Hb_001004_100 Hb_001004_100 Hb_002849_150--Hb_001004_100 Hb_107201_010 Hb_107201_010 Hb_002849_150--Hb_107201_010 Hb_000135_050 Hb_000135_050 Hb_002849_150--Hb_000135_050 Hb_000922_010 Hb_000922_010 Hb_002849_150--Hb_000922_010 Hb_012753_190 Hb_012753_190 Hb_002849_150--Hb_012753_190 Hb_029510_110 Hb_029510_110 Hb_002849_150--Hb_029510_110 Hb_002675_120 Hb_002675_120 Hb_006683_010--Hb_002675_120 Hb_000050_130 Hb_000050_130 Hb_006683_010--Hb_000050_130 Hb_001652_110 Hb_001652_110 Hb_006683_010--Hb_001652_110 Hb_000160_100 Hb_000160_100 Hb_006683_010--Hb_000160_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0120407 0.13307 0.19276 0.286052 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.110333 0.364617 2.47073 7.18259 0

CAGE analysis