Hb_000455_130

Information

Type -
Description -
Location Contig455: 188758-197711
Sequence    

Annotation

kegg
ID egr:104424752
description aspartic proteinase A1-like
nr
ID XP_012087600.1
description PREDICTED: aspartic proteinase A1-like isoform X1 [Jatropha curcas]
swissprot
ID O04057
description Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1
trembl
ID A0A067JPW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24447 PE=3 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43411: 188708-190616
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000455_130 0.0 - - PREDICTED: aspartic proteinase A1-like isoform X1 [Jatropha curcas]
2 Hb_019840_030 0.0916759207 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
3 Hb_000321_090 0.0955768011 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
4 Hb_006478_030 0.0986553712 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
5 Hb_001221_180 0.1012007243 - - calcineurin-like phosphoesterase [Manihot esculenta]
6 Hb_007747_170 0.1022685415 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
7 Hb_080147_050 0.1048453455 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
8 Hb_000599_360 0.1094828832 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_160608_010 0.1096029332 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
10 Hb_000317_350 0.1105880483 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
11 Hb_020805_180 0.1127520773 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
12 Hb_002889_020 0.1133722094 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
13 Hb_011925_020 0.1134286811 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_005333_050 0.1151574475 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
15 Hb_013358_050 0.1152655026 - - NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative [Ricinus communis]
16 Hb_001085_290 0.1156561754 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
17 Hb_000080_110 0.1167909379 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
18 Hb_002357_070 0.1168314545 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
19 Hb_007245_020 0.1169004398 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
20 Hb_060980_010 0.1172023355 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000455_130 Hb_000455_130 Hb_019840_030 Hb_019840_030 Hb_000455_130--Hb_019840_030 Hb_000321_090 Hb_000321_090 Hb_000455_130--Hb_000321_090 Hb_006478_030 Hb_006478_030 Hb_000455_130--Hb_006478_030 Hb_001221_180 Hb_001221_180 Hb_000455_130--Hb_001221_180 Hb_007747_170 Hb_007747_170 Hb_000455_130--Hb_007747_170 Hb_080147_050 Hb_080147_050 Hb_000455_130--Hb_080147_050 Hb_060980_010 Hb_060980_010 Hb_019840_030--Hb_060980_010 Hb_002596_060 Hb_002596_060 Hb_019840_030--Hb_002596_060 Hb_019840_030--Hb_007747_170 Hb_019840_030--Hb_001221_180 Hb_001085_290 Hb_001085_290 Hb_019840_030--Hb_001085_290 Hb_027506_010 Hb_027506_010 Hb_019840_030--Hb_027506_010 Hb_000080_110 Hb_000080_110 Hb_000321_090--Hb_000080_110 Hb_000321_090--Hb_080147_050 Hb_002027_190 Hb_002027_190 Hb_000321_090--Hb_002027_190 Hb_020805_180 Hb_020805_180 Hb_000321_090--Hb_020805_180 Hb_000049_250 Hb_000049_250 Hb_000321_090--Hb_000049_250 Hb_001322_180 Hb_001322_180 Hb_000321_090--Hb_001322_180 Hb_160608_010 Hb_160608_010 Hb_006478_030--Hb_160608_010 Hb_007245_020 Hb_007245_020 Hb_006478_030--Hb_007245_020 Hb_002357_070 Hb_002357_070 Hb_006478_030--Hb_002357_070 Hb_000318_150 Hb_000318_150 Hb_006478_030--Hb_000318_150 Hb_006478_030--Hb_000080_110 Hb_000206_160 Hb_000206_160 Hb_006478_030--Hb_000206_160 Hb_001221_180--Hb_002357_070 Hb_000011_270 Hb_000011_270 Hb_001221_180--Hb_000011_270 Hb_001221_180--Hb_060980_010 Hb_003093_040 Hb_003093_040 Hb_001221_180--Hb_003093_040 Hb_000568_050 Hb_000568_050 Hb_001221_180--Hb_000568_050 Hb_004450_070 Hb_004450_070 Hb_007747_170--Hb_004450_070 Hb_000608_230 Hb_000608_230 Hb_007747_170--Hb_000608_230 Hb_007747_170--Hb_007245_020 Hb_000331_580 Hb_000331_580 Hb_007747_170--Hb_000331_580 Hb_007747_170--Hb_002027_190 Hb_080147_050--Hb_020805_180 Hb_000834_230 Hb_000834_230 Hb_080147_050--Hb_000834_230 Hb_000787_200 Hb_000787_200 Hb_080147_050--Hb_000787_200 Hb_158845_060 Hb_158845_060 Hb_080147_050--Hb_158845_060 Hb_080147_050--Hb_007245_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.9496 104.289 94.0084 102.886 57.8816 40.5669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.7423 19.4656 51.5431 176.99 124.424

CAGE analysis