Hb_000457_040

Information

Type -
Description -
Location Contig457: 73792-83433
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000457_040 0.0 - - -
2 Hb_000853_380 0.2189202074 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002185_010 0.2447606233 - - PREDICTED: uncharacterized protein LOC105795658 [Gossypium raimondii]
4 Hb_107500_010 0.2510046801 - - -
5 Hb_001268_100 0.3372576694 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
6 Hb_000326_020 0.3389768797 - - -
7 Hb_032533_010 0.339580286 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
8 Hb_003687_180 0.3413469679 - - hypothetical protein JCGZ_02335 [Jatropha curcas]
9 Hb_134310_030 0.3433733781 - - hypothetical protein JCGZ_10790 [Jatropha curcas]
10 Hb_005524_010 0.3437411065 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
11 Hb_001798_040 0.3578890629 transcription factor TF Family: NAC hypothetical protein ARALYDRAFT_918808 [Arabidopsis lyrata subsp. lyrata]
12 Hb_001935_210 0.3580038254 - - -
13 Hb_000721_020 0.3676932221 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
14 Hb_006045_060 0.3707138465 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
15 Hb_000025_550 0.3710459122 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002014_110 0.3718665518 - - -
17 Hb_012500_010 0.3732994202 - - Ran GTPase binding protein, putative [Ricinus communis]
18 Hb_161994_020 0.375424498 - - -
19 Hb_142392_010 0.3821142998 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
20 Hb_000563_220 0.3848935634 - - hypothetical protein VITISV_004111 [Vitis vinifera]

Gene co-expression network

sample Hb_000457_040 Hb_000457_040 Hb_000853_380 Hb_000853_380 Hb_000457_040--Hb_000853_380 Hb_002185_010 Hb_002185_010 Hb_000457_040--Hb_002185_010 Hb_107500_010 Hb_107500_010 Hb_000457_040--Hb_107500_010 Hb_001268_100 Hb_001268_100 Hb_000457_040--Hb_001268_100 Hb_000326_020 Hb_000326_020 Hb_000457_040--Hb_000326_020 Hb_032533_010 Hb_032533_010 Hb_000457_040--Hb_032533_010 Hb_000853_380--Hb_107500_010 Hb_001798_040 Hb_001798_040 Hb_000853_380--Hb_001798_040 Hb_000853_380--Hb_001268_100 Hb_004724_350 Hb_004724_350 Hb_000853_380--Hb_004724_350 Hb_005524_010 Hb_005524_010 Hb_000853_380--Hb_005524_010 Hb_054144_010 Hb_054144_010 Hb_002185_010--Hb_054144_010 Hb_161994_020 Hb_161994_020 Hb_002185_010--Hb_161994_020 Hb_003096_020 Hb_003096_020 Hb_002185_010--Hb_003096_020 Hb_001935_210 Hb_001935_210 Hb_002185_010--Hb_001935_210 Hb_002185_010--Hb_107500_010 Hb_107500_010--Hb_001268_100 Hb_107500_010--Hb_004724_350 Hb_134310_030 Hb_134310_030 Hb_107500_010--Hb_134310_030 Hb_002016_160 Hb_002016_160 Hb_107500_010--Hb_002016_160 Hb_001268_100--Hb_134310_030 Hb_122873_010 Hb_122873_010 Hb_001268_100--Hb_122873_010 Hb_001268_100--Hb_004724_350 Hb_002257_020 Hb_002257_020 Hb_001268_100--Hb_002257_020 Hb_000721_020 Hb_000721_020 Hb_000326_020--Hb_000721_020 Hb_006045_060 Hb_006045_060 Hb_000326_020--Hb_006045_060 Hb_000326_020--Hb_032533_010 Hb_003687_180 Hb_003687_180 Hb_000326_020--Hb_003687_180 Hb_074152_010 Hb_074152_010 Hb_000326_020--Hb_074152_010 Hb_001541_240 Hb_001541_240 Hb_000326_020--Hb_001541_240 Hb_032533_010--Hb_003687_180 Hb_032533_010--Hb_000721_020 Hb_032533_010--Hb_006045_060 Hb_001055_040 Hb_001055_040 Hb_032533_010--Hb_001055_040 Hb_010232_010 Hb_010232_010 Hb_032533_010--Hb_010232_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0441297 0.0374456 0 0 0.0414558 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0805548 0 0 0

CAGE analysis