Hb_000457_120

Information

Type -
Description -
Location Contig457: 145004-148739
Sequence    

Annotation

kegg
ID rcu:RCOM_1679190
description ankyrin repeat-containing protein, putative
nr
ID XP_012071094.1
description PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
swissprot
ID Q6GNY1
description E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2 SV=1
trembl
ID A0A067LPA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10174 PE=4 SV=1
Gene Ontology
ID GO:0016874
description ankyrin repeat-containing isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43459: 144616-148671 , PASA_asmbl_43460: 146305-146486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000457_120 0.0 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
2 Hb_000928_200 0.0849183247 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
3 Hb_001936_120 0.1027946196 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
4 Hb_029791_010 0.1091053201 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
5 Hb_000020_200 0.1097457586 - - hypothetical protein EUGRSUZ_B00411 [Eucalyptus grandis]
6 Hb_005305_040 0.1107661517 transcription factor TF Family: C3H transcription factor, putative [Ricinus communis]
7 Hb_002759_030 0.1113362545 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
8 Hb_000317_170 0.1120886231 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
9 Hb_001663_060 0.1121810781 - - ribonuclease t2, putative [Ricinus communis]
10 Hb_174541_030 0.1125776926 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
11 Hb_001688_030 0.1127879427 - - hypothetical protein JCGZ_10716 [Jatropha curcas]
12 Hb_000003_580 0.1146994205 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001079_050 0.1157501256 - - Calmodulin, putative [Ricinus communis]
14 Hb_004917_020 0.1203633445 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
15 Hb_000137_050 0.1228333482 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001360_020 0.1236178171 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
17 Hb_003086_030 0.1237031879 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
18 Hb_133492_010 0.1239746098 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_006154_010 0.1262655391 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
20 Hb_000856_030 0.1275276205 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000457_120 Hb_000457_120 Hb_000928_200 Hb_000928_200 Hb_000457_120--Hb_000928_200 Hb_001936_120 Hb_001936_120 Hb_000457_120--Hb_001936_120 Hb_029791_010 Hb_029791_010 Hb_000457_120--Hb_029791_010 Hb_000020_200 Hb_000020_200 Hb_000457_120--Hb_000020_200 Hb_005305_040 Hb_005305_040 Hb_000457_120--Hb_005305_040 Hb_002759_030 Hb_002759_030 Hb_000457_120--Hb_002759_030 Hb_000317_170 Hb_000317_170 Hb_000928_200--Hb_000317_170 Hb_000928_200--Hb_005305_040 Hb_000856_030 Hb_000856_030 Hb_000928_200--Hb_000856_030 Hb_000030_230 Hb_000030_230 Hb_000928_200--Hb_000030_230 Hb_000307_060 Hb_000307_060 Hb_000928_200--Hb_000307_060 Hb_001936_120--Hb_029791_010 Hb_036520_030 Hb_036520_030 Hb_001936_120--Hb_036520_030 Hb_001936_120--Hb_005305_040 Hb_000358_060 Hb_000358_060 Hb_001936_120--Hb_000358_060 Hb_011381_050 Hb_011381_050 Hb_001936_120--Hb_011381_050 Hb_002388_070 Hb_002388_070 Hb_001936_120--Hb_002388_070 Hb_000000_260 Hb_000000_260 Hb_029791_010--Hb_000000_260 Hb_180980_010 Hb_180980_010 Hb_029791_010--Hb_180980_010 Hb_029791_010--Hb_000317_170 Hb_133492_010 Hb_133492_010 Hb_029791_010--Hb_133492_010 Hb_000599_160 Hb_000599_160 Hb_029791_010--Hb_000599_160 Hb_001663_060 Hb_001663_060 Hb_000020_200--Hb_001663_060 Hb_000849_030 Hb_000849_030 Hb_000020_200--Hb_000849_030 Hb_003466_010 Hb_003466_010 Hb_000020_200--Hb_003466_010 Hb_008021_050 Hb_008021_050 Hb_000020_200--Hb_008021_050 Hb_000020_200--Hb_036520_030 Hb_000161_140 Hb_000161_140 Hb_005305_040--Hb_000161_140 Hb_005305_040--Hb_002759_030 Hb_163950_050 Hb_163950_050 Hb_005305_040--Hb_163950_050 Hb_001195_710 Hb_001195_710 Hb_002759_030--Hb_001195_710 Hb_014361_010 Hb_014361_010 Hb_002759_030--Hb_014361_010 Hb_002759_030--Hb_000928_200 Hb_001001_070 Hb_001001_070 Hb_002759_030--Hb_001001_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0531422 5.34117 5.08 28.3551 0.0555208 0.175768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.60358 0.17377 0.243709 2.15513 11.441

CAGE analysis