Hb_000457_130

Information

Type -
Description -
Location Contig457: 166476-179166
Sequence    

Annotation

kegg
ID eus:EUTSA_v10004214mg
description hypothetical protein
nr
ID KFK37638.1
description hypothetical protein AALP_AA3G009100 [Arabis alpina]
swissprot
ID Q9FKS8
description Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1
trembl
ID K4BDI3
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc02g093870.2 PE=4 SV=1
Gene Ontology
ID GO:0005737
description lysine histidine transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43462: 169501-169955 , PASA_asmbl_43463: 170083-170381 , PASA_asmbl_43464: 179017-179174
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000457_130 0.0 - - hypothetical protein AALP_AA3G009100 [Arabis alpina]
2 Hb_000465_180 0.1092650615 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
3 Hb_001597_110 0.1171095036 - - -
4 Hb_001300_140 0.1188093337 - - -
5 Hb_009812_010 0.1197478595 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_000844_090 0.1212860072 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
7 Hb_011576_010 0.1382719105 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
8 Hb_000343_040 0.1389862932 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
9 Hb_006916_020 0.1394290363 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
10 Hb_011440_010 0.1401419134 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
11 Hb_001004_130 0.1405735272 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
12 Hb_002379_060 0.1456334624 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
13 Hb_009150_060 0.146525322 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
14 Hb_135554_010 0.1467939948 - - Insulin-degrading enzyme, putative [Ricinus communis]
15 Hb_001366_050 0.1482902813 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2 [Populus euphratica]
16 Hb_004128_090 0.150387483 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
17 Hb_074892_010 0.1504910448 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
18 Hb_000847_120 0.1505005315 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
19 Hb_033622_020 0.1505137409 - - lipid binding protein, putative [Ricinus communis]
20 Hb_000753_180 0.1505255414 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]

Gene co-expression network

sample Hb_000457_130 Hb_000457_130 Hb_000465_180 Hb_000465_180 Hb_000457_130--Hb_000465_180 Hb_001597_110 Hb_001597_110 Hb_000457_130--Hb_001597_110 Hb_001300_140 Hb_001300_140 Hb_000457_130--Hb_001300_140 Hb_009812_010 Hb_009812_010 Hb_000457_130--Hb_009812_010 Hb_000844_090 Hb_000844_090 Hb_000457_130--Hb_000844_090 Hb_011576_010 Hb_011576_010 Hb_000457_130--Hb_011576_010 Hb_000137_060 Hb_000137_060 Hb_000465_180--Hb_000137_060 Hb_007382_070 Hb_007382_070 Hb_000465_180--Hb_007382_070 Hb_135554_010 Hb_135554_010 Hb_000465_180--Hb_135554_010 Hb_001519_240 Hb_001519_240 Hb_000465_180--Hb_001519_240 Hb_001288_050 Hb_001288_050 Hb_000465_180--Hb_001288_050 Hb_074892_010 Hb_074892_010 Hb_001597_110--Hb_074892_010 Hb_033622_020 Hb_033622_020 Hb_001597_110--Hb_033622_020 Hb_000380_130 Hb_000380_130 Hb_001597_110--Hb_000380_130 Hb_006573_250 Hb_006573_250 Hb_001597_110--Hb_006573_250 Hb_001218_070 Hb_001218_070 Hb_001597_110--Hb_001218_070 Hb_011440_010 Hb_011440_010 Hb_001300_140--Hb_011440_010 Hb_009150_060 Hb_009150_060 Hb_001300_140--Hb_009150_060 Hb_000836_260 Hb_000836_260 Hb_001300_140--Hb_000836_260 Hb_000753_180 Hb_000753_180 Hb_001300_140--Hb_000753_180 Hb_005333_210 Hb_005333_210 Hb_001300_140--Hb_005333_210 Hb_001300_140--Hb_000844_090 Hb_010839_010 Hb_010839_010 Hb_009812_010--Hb_010839_010 Hb_005116_010 Hb_005116_010 Hb_009812_010--Hb_005116_010 Hb_004586_110 Hb_004586_110 Hb_009812_010--Hb_004586_110 Hb_004128_090 Hb_004128_090 Hb_009812_010--Hb_004128_090 Hb_004010_090 Hb_004010_090 Hb_009812_010--Hb_004010_090 Hb_010334_040 Hb_010334_040 Hb_009812_010--Hb_010334_040 Hb_001004_130 Hb_001004_130 Hb_000844_090--Hb_001004_130 Hb_000844_090--Hb_011440_010 Hb_001005_210 Hb_001005_210 Hb_000844_090--Hb_001005_210 Hb_000844_090--Hb_005333_210 Hb_000844_090--Hb_004586_110 Hb_000230_020 Hb_000230_020 Hb_011576_010--Hb_000230_020 Hb_001949_010 Hb_001949_010 Hb_011576_010--Hb_001949_010 Hb_003095_110 Hb_003095_110 Hb_011576_010--Hb_003095_110 Hb_000751_070 Hb_000751_070 Hb_011576_010--Hb_000751_070 Hb_011576_010--Hb_001597_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0146397 0.481458 1.28291 0.610187 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0332165 0.0261381 0 4.5029 2.22517

CAGE analysis