Hb_000457_160

Information

Type -
Description -
Location Contig457: 199234-200175
Sequence    

Annotation

kegg
ID rcu:RCOM_1679030
description hypothetical protein
nr
ID XP_012070995.1
description PREDICTED: uncharacterized protein LOC105633076 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LG87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10168 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000457_160 0.0 - - PREDICTED: uncharacterized protein LOC105633076 [Jatropha curcas]
2 Hb_006198_050 0.1204366296 - - protein with unknown function [Ricinus communis]
3 Hb_011640_020 0.1490929729 - - hypothetical protein VITISV_036432 [Vitis vinifera]
4 Hb_005656_060 0.1659899402 - - -
5 Hb_000208_290 0.1678956431 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
6 Hb_022288_020 0.1722820539 - - hypothetical protein POPTR_0006s08590g [Populus trichocarpa]
7 Hb_002027_340 0.1725079362 - - -
8 Hb_103873_010 0.1773256345 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
9 Hb_000976_010 0.1781047687 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
10 Hb_019613_020 0.1789914677 - - phospholipase C, putative [Ricinus communis]
11 Hb_000907_100 0.1819033398 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
12 Hb_000035_120 0.1831691729 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
13 Hb_006602_010 0.1842942055 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
14 Hb_002038_060 0.1851016586 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
15 Hb_001102_110 0.1851921491 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
16 Hb_004735_010 0.1873470168 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
17 Hb_011287_090 0.187384432 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
18 Hb_005227_070 0.1900871962 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_000077_130 0.1908466549 - - PREDICTED: callose synthase 12 [Jatropha curcas]
20 Hb_003073_130 0.194161343 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000457_160 Hb_000457_160 Hb_006198_050 Hb_006198_050 Hb_000457_160--Hb_006198_050 Hb_011640_020 Hb_011640_020 Hb_000457_160--Hb_011640_020 Hb_005656_060 Hb_005656_060 Hb_000457_160--Hb_005656_060 Hb_000208_290 Hb_000208_290 Hb_000457_160--Hb_000208_290 Hb_022288_020 Hb_022288_020 Hb_000457_160--Hb_022288_020 Hb_002027_340 Hb_002027_340 Hb_000457_160--Hb_002027_340 Hb_004735_010 Hb_004735_010 Hb_006198_050--Hb_004735_010 Hb_000907_100 Hb_000907_100 Hb_006198_050--Hb_000907_100 Hb_019613_020 Hb_019613_020 Hb_006198_050--Hb_019613_020 Hb_035524_030 Hb_035524_030 Hb_006198_050--Hb_035524_030 Hb_006602_010 Hb_006602_010 Hb_006198_050--Hb_006602_010 Hb_011640_020--Hb_006198_050 Hb_000380_180 Hb_000380_180 Hb_011640_020--Hb_000380_180 Hb_103873_010 Hb_103873_010 Hb_011640_020--Hb_103873_010 Hb_011640_020--Hb_000907_100 Hb_011640_020--Hb_006602_010 Hb_005867_080 Hb_005867_080 Hb_005656_060--Hb_005867_080 Hb_005656_060--Hb_022288_020 Hb_041774_010 Hb_041774_010 Hb_005656_060--Hb_041774_010 Hb_001767_020 Hb_001767_020 Hb_005656_060--Hb_001767_020 Hb_010317_030 Hb_010317_030 Hb_005656_060--Hb_010317_030 Hb_004156_060 Hb_004156_060 Hb_000208_290--Hb_004156_060 Hb_000161_030 Hb_000161_030 Hb_000208_290--Hb_000161_030 Hb_006029_010 Hb_006029_010 Hb_000208_290--Hb_006029_010 Hb_022288_010 Hb_022288_010 Hb_000208_290--Hb_022288_010 Hb_154381_050 Hb_154381_050 Hb_000208_290--Hb_154381_050 Hb_006091_030 Hb_006091_030 Hb_000208_290--Hb_006091_030 Hb_000077_130 Hb_000077_130 Hb_022288_020--Hb_000077_130 Hb_007926_040 Hb_007926_040 Hb_022288_020--Hb_007926_040 Hb_010436_030 Hb_010436_030 Hb_022288_020--Hb_010436_030 Hb_006026_040 Hb_006026_040 Hb_022288_020--Hb_006026_040 Hb_000016_110 Hb_000016_110 Hb_022288_020--Hb_000016_110 Hb_000497_140 Hb_000497_140 Hb_022288_020--Hb_000497_140 Hb_001433_220 Hb_001433_220 Hb_002027_340--Hb_001433_220 Hb_001902_050 Hb_001902_050 Hb_002027_340--Hb_001902_050 Hb_005271_150 Hb_005271_150 Hb_002027_340--Hb_005271_150 Hb_006935_050 Hb_006935_050 Hb_002027_340--Hb_006935_050 Hb_002027_340--Hb_006602_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9959 5.12558 0.667963 2.23618 33.6617 75.1648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.126 8.37668 50.8689 5.32882 1.57477

CAGE analysis