Hb_000457_180

Information

Type -
Description -
Location Contig457: 215847-219065
Sequence    

Annotation

kegg
ID rcu:RCOM_1679010
description cytochrome C1, putative
nr
ID XP_012070956.1
description PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
swissprot
ID P25076
description Cytochrome c1-1, heme protein, mitochondrial OS=Solanum tuberosum GN=CYCL PE=2 SV=1
trembl
ID A0A067LCX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10166 PE=4 SV=1
Gene Ontology
ID GO:0009055
description cytochrome c1- heme mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43472: 215906-220439 , PASA_asmbl_43473: 215917-220419
cDNA
(Sanger)
(ID:Location)		 003_D18.ab1: 216772-220412 , 005_J12.ab1: 217516-220419 , 047_D18.ab1: 216824-220419 , 051_K03.ab1: 216785-220414

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000457_180 0.0 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
2 Hb_001341_150 0.0617862218 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
3 Hb_003362_030 0.0726664507 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
4 Hb_008071_020 0.0735718648 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
5 Hb_012565_070 0.0735864243 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
6 Hb_001279_080 0.0744248806 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
7 Hb_150651_040 0.074953723 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
8 Hb_000193_110 0.077765381 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
9 Hb_002226_060 0.0779600756 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
10 Hb_001931_010 0.0798627748 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
11 Hb_000580_020 0.0807858347 - - unnamed protein product [Vitis vinifera]
12 Hb_010098_050 0.0816222781 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
13 Hb_000529_030 0.0821449589 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_003992_270 0.0827730886 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
15 Hb_000045_310 0.0851414868 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
16 Hb_006615_240 0.0872779384 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
17 Hb_004041_020 0.0874614069 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
18 Hb_001195_480 0.0913178317 - - cop9 complex subunit, putative [Ricinus communis]
19 Hb_026889_030 0.0917653485 - - protein with unknown function [Ricinus communis]
20 Hb_000261_160 0.0923044863 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000457_180 Hb_000457_180 Hb_001341_150 Hb_001341_150 Hb_000457_180--Hb_001341_150 Hb_003362_030 Hb_003362_030 Hb_000457_180--Hb_003362_030 Hb_008071_020 Hb_008071_020 Hb_000457_180--Hb_008071_020 Hb_012565_070 Hb_012565_070 Hb_000457_180--Hb_012565_070 Hb_001279_080 Hb_001279_080 Hb_000457_180--Hb_001279_080 Hb_150651_040 Hb_150651_040 Hb_000457_180--Hb_150651_040 Hb_001931_010 Hb_001931_010 Hb_001341_150--Hb_001931_010 Hb_010098_050 Hb_010098_050 Hb_001341_150--Hb_010098_050 Hb_006615_240 Hb_006615_240 Hb_001341_150--Hb_006615_240 Hb_002078_140 Hb_002078_140 Hb_001341_150--Hb_002078_140 Hb_028396_010 Hb_028396_010 Hb_001341_150--Hb_028396_010 Hb_003362_030--Hb_001341_150 Hb_011609_020 Hb_011609_020 Hb_003362_030--Hb_011609_020 Hb_148121_040 Hb_148121_040 Hb_003362_030--Hb_148121_040 Hb_003362_030--Hb_008071_020 Hb_021068_040 Hb_021068_040 Hb_003362_030--Hb_021068_040 Hb_008071_020--Hb_001931_010 Hb_008071_020--Hb_001279_080 Hb_008071_020--Hb_028396_010 Hb_026053_020 Hb_026053_020 Hb_008071_020--Hb_026053_020 Hb_006326_040 Hb_006326_040 Hb_008071_020--Hb_006326_040 Hb_000045_310 Hb_000045_310 Hb_008071_020--Hb_000045_310 Hb_000300_260 Hb_000300_260 Hb_012565_070--Hb_000300_260 Hb_003848_040 Hb_003848_040 Hb_012565_070--Hb_003848_040 Hb_001863_380 Hb_001863_380 Hb_012565_070--Hb_001863_380 Hb_002307_180 Hb_002307_180 Hb_012565_070--Hb_002307_180 Hb_001105_170 Hb_001105_170 Hb_012565_070--Hb_001105_170 Hb_001279_080--Hb_001931_010 Hb_018133_020 Hb_018133_020 Hb_001279_080--Hb_018133_020 Hb_000431_070 Hb_000431_070 Hb_001279_080--Hb_000431_070 Hb_001279_080--Hb_000045_310 Hb_000566_120 Hb_000566_120 Hb_001279_080--Hb_000566_120 Hb_005245_080 Hb_005245_080 Hb_150651_040--Hb_005245_080 Hb_005391_040 Hb_005391_040 Hb_150651_040--Hb_005391_040 Hb_000529_030 Hb_000529_030 Hb_150651_040--Hb_000529_030 Hb_150651_040--Hb_001279_080 Hb_000465_390 Hb_000465_390 Hb_150651_040--Hb_000465_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.3192 30.4584 75.4256 57.9106 40.908 30.4424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.7002 99.0191 50.7941 32.333 38.2802

CAGE analysis