Hb_000457_190

Information

Type -
Description -
Location Contig457: 220647-221553
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43474: 219757-220039
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000457_190 0.0 - - -
2 Hb_001141_300 0.2620941257 - - -
3 Hb_002248_040 0.2654262877 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000049_130 0.2856159351 - - PREDICTED: uncharacterized protein LOC104879855 [Vitis vinifera]
5 Hb_001814_060 0.293236376 - - PREDICTED: uncharacterized protein LOC105650637 [Jatropha curcas]
6 Hb_000094_030 0.2951787511 - - -
7 Hb_011310_090 0.2965356493 - - PREDICTED: putative ATPase N2B isoform X3 [Vitis vinifera]
8 Hb_004917_030 0.3070263667 - - -
9 Hb_002518_110 0.3092420913 - - 1-amino-cyclopropane-1-carboxylic acid oxidase [Manihot esculenta]
10 Hb_007595_060 0.3119563952 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000915_190 0.3143283256 - - -
12 Hb_126395_010 0.3167427734 - - hypothetical protein VITISV_043980 [Vitis vinifera]
13 Hb_004088_050 0.316838663 - - hypothetical protein VITISV_027174 [Vitis vinifera]
14 Hb_115031_030 0.3186231343 - - ribosomal protein S12 (chloroplast) [Camellia sinensis]
15 Hb_000505_050 0.319737508 - - PREDICTED: heparanase-like protein 3 isoform X2 [Gossypium raimondii]
16 Hb_000422_070 0.3214467018 - - conserved hypothetical protein [Ricinus communis]
17 Hb_032258_020 0.3296934917 - - PREDICTED: amidase 1-like isoform X2 [Malus domestica]
18 Hb_008206_090 0.3304586993 - - PREDICTED: uncharacterized protein LOC100811033 [Glycine max]
19 Hb_006274_040 0.3316777612 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
20 Hb_002368_090 0.331824313 - - PREDICTED: cationic peroxidase 1-like [Populus euphratica]

Gene co-expression network

sample Hb_000457_190 Hb_000457_190 Hb_001141_300 Hb_001141_300 Hb_000457_190--Hb_001141_300 Hb_002248_040 Hb_002248_040 Hb_000457_190--Hb_002248_040 Hb_000049_130 Hb_000049_130 Hb_000457_190--Hb_000049_130 Hb_001814_060 Hb_001814_060 Hb_000457_190--Hb_001814_060 Hb_000094_030 Hb_000094_030 Hb_000457_190--Hb_000094_030 Hb_011310_090 Hb_011310_090 Hb_000457_190--Hb_011310_090 Hb_083641_010 Hb_083641_010 Hb_001141_300--Hb_083641_010 Hb_001252_200 Hb_001252_200 Hb_001141_300--Hb_001252_200 Hb_001005_150 Hb_001005_150 Hb_001141_300--Hb_001005_150 Hb_000087_030 Hb_000087_030 Hb_001141_300--Hb_000087_030 Hb_004724_470 Hb_004724_470 Hb_001141_300--Hb_004724_470 Hb_142328_010 Hb_142328_010 Hb_001141_300--Hb_142328_010 Hb_007595_060 Hb_007595_060 Hb_002248_040--Hb_007595_060 Hb_126395_010 Hb_126395_010 Hb_002248_040--Hb_126395_010 Hb_011649_020 Hb_011649_020 Hb_002248_040--Hb_011649_020 Hb_115031_030 Hb_115031_030 Hb_002248_040--Hb_115031_030 Hb_000331_050 Hb_000331_050 Hb_002248_040--Hb_000331_050 Hb_181838_010 Hb_181838_010 Hb_000049_130--Hb_181838_010 Hb_000049_130--Hb_001814_060 Hb_001221_200 Hb_001221_200 Hb_000049_130--Hb_001221_200 Hb_000350_030 Hb_000350_030 Hb_000049_130--Hb_000350_030 Hb_006693_040 Hb_006693_040 Hb_000049_130--Hb_006693_040 Hb_000556_010 Hb_000556_010 Hb_000049_130--Hb_000556_010 Hb_000915_190 Hb_000915_190 Hb_001814_060--Hb_000915_190 Hb_000363_450 Hb_000363_450 Hb_001814_060--Hb_000363_450 Hb_000445_160 Hb_000445_160 Hb_001814_060--Hb_000445_160 Hb_000483_320 Hb_000483_320 Hb_001814_060--Hb_000483_320 Hb_128750_010 Hb_128750_010 Hb_001814_060--Hb_128750_010 Hb_000422_070 Hb_000422_070 Hb_000094_030--Hb_000422_070 Hb_000107_180 Hb_000107_180 Hb_000094_030--Hb_000107_180 Hb_004917_030 Hb_004917_030 Hb_000094_030--Hb_004917_030 Hb_004109_180 Hb_004109_180 Hb_000094_030--Hb_004109_180 Hb_003642_020 Hb_003642_020 Hb_000094_030--Hb_003642_020 Hb_002518_110 Hb_002518_110 Hb_011310_090--Hb_002518_110 Hb_011310_090--Hb_001141_300 Hb_017098_010 Hb_017098_010 Hb_011310_090--Hb_017098_010 Hb_001631_100 Hb_001631_100 Hb_011310_090--Hb_001631_100 Hb_011310_090--Hb_142328_010 Hb_002636_040 Hb_002636_040 Hb_011310_090--Hb_002636_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0714129 0 0.281859 0.43193 0 1.01157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.132277 0 0.167496 0.717453

CAGE analysis