Hb_000457_250

Information

Type -
Description -
Location Contig457: 273581-274156
Sequence    

Annotation

kegg
ID rcu:RCOM_0813640
description Polcalcin Jun o, putative (EC:1.3.1.74)
nr
ID XP_012066881.1
description PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
swissprot
ID Q9ZQE6
description Calmodulin-like protein 1 OS=Arabidopsis thaliana GN=CML1 PE=2 SV=1
trembl
ID B9RYI9
description Polcalcin Jun o, putative OS=Ricinus communis GN=RCOM_0813640 PE=4 SV=1
Gene Ontology
ID GO:0005739
description calmodulin-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43482: 273482-273899 , PASA_asmbl_43483: 273937-274269
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000457_250 0.0 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
2 Hb_002397_050 0.120597979 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
3 Hb_004162_270 0.1368026481 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
4 Hb_010632_020 0.1409916474 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
5 Hb_003688_140 0.1494131862 - - PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
6 Hb_000054_030 0.1529313399 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
7 Hb_002716_110 0.1641703573 - - PREDICTED: interaptin [Jatropha curcas]
8 Hb_006736_050 0.1653246 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
9 Hb_002374_450 0.1661830194 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
10 Hb_000684_200 0.1698856563 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
11 Hb_001054_060 0.1718821514 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
12 Hb_005276_070 0.1726064981 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
13 Hb_074109_010 0.1729137611 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
14 Hb_006420_010 0.1731405617 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
15 Hb_158092_100 0.1735632335 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
16 Hb_033152_110 0.1747667837 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
17 Hb_000768_150 0.1747928806 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
18 Hb_001365_030 0.1753596128 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
19 Hb_005731_100 0.1754143325 - - monovalent cation:proton antiporter, putative [Ricinus communis]
20 Hb_000270_280 0.1758228175 - - Rhicadhesin receptor precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000457_250 Hb_000457_250 Hb_002397_050 Hb_002397_050 Hb_000457_250--Hb_002397_050 Hb_004162_270 Hb_004162_270 Hb_000457_250--Hb_004162_270 Hb_010632_020 Hb_010632_020 Hb_000457_250--Hb_010632_020 Hb_003688_140 Hb_003688_140 Hb_000457_250--Hb_003688_140 Hb_000054_030 Hb_000054_030 Hb_000457_250--Hb_000054_030 Hb_002716_110 Hb_002716_110 Hb_000457_250--Hb_002716_110 Hb_002397_050--Hb_000054_030 Hb_000115_360 Hb_000115_360 Hb_002397_050--Hb_000115_360 Hb_004032_110 Hb_004032_110 Hb_002397_050--Hb_004032_110 Hb_002397_050--Hb_002716_110 Hb_006736_050 Hb_006736_050 Hb_002397_050--Hb_006736_050 Hb_000684_200 Hb_000684_200 Hb_004162_270--Hb_000684_200 Hb_000270_280 Hb_000270_280 Hb_004162_270--Hb_000270_280 Hb_003680_090 Hb_003680_090 Hb_004162_270--Hb_003680_090 Hb_003053_070 Hb_003053_070 Hb_004162_270--Hb_003053_070 Hb_000395_010 Hb_000395_010 Hb_004162_270--Hb_000395_010 Hb_005784_030 Hb_005784_030 Hb_004162_270--Hb_005784_030 Hb_001365_030 Hb_001365_030 Hb_010632_020--Hb_001365_030 Hb_001360_030 Hb_001360_030 Hb_010632_020--Hb_001360_030 Hb_000940_030 Hb_000940_030 Hb_010632_020--Hb_000940_030 Hb_002374_450 Hb_002374_450 Hb_010632_020--Hb_002374_450 Hb_010632_020--Hb_003053_070 Hb_005276_070 Hb_005276_070 Hb_010632_020--Hb_005276_070 Hb_000538_300 Hb_000538_300 Hb_003688_140--Hb_000538_300 Hb_000264_280 Hb_000264_280 Hb_003688_140--Hb_000264_280 Hb_003688_140--Hb_000684_200 Hb_000005_100 Hb_000005_100 Hb_003688_140--Hb_000005_100 Hb_003688_140--Hb_004162_270 Hb_010098_040 Hb_010098_040 Hb_003688_140--Hb_010098_040 Hb_002235_110 Hb_002235_110 Hb_000054_030--Hb_002235_110 Hb_002949_020 Hb_002949_020 Hb_000054_030--Hb_002949_020 Hb_003226_200 Hb_003226_200 Hb_000054_030--Hb_003226_200 Hb_033152_110 Hb_033152_110 Hb_000054_030--Hb_033152_110 Hb_074197_030 Hb_074197_030 Hb_000054_030--Hb_074197_030 Hb_000679_030 Hb_000679_030 Hb_002716_110--Hb_000679_030 Hb_005493_010 Hb_005493_010 Hb_002716_110--Hb_005493_010 Hb_002817_050 Hb_002817_050 Hb_002716_110--Hb_002817_050 Hb_002716_110--Hb_003688_140 Hb_002716_110--Hb_000054_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.222192 2.21092 6.47337 5.86783 0.176607 0.689522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.50309 1.34994 0 3.46887 9.89259

CAGE analysis