Hb_000457_260

Information

Type -
Description -
Location Contig457: 277792-279747
Sequence    

Annotation

kegg
ID vvi:100260539
description pentatricopeptide repeat-containing protein At2g15690
nr
ID XP_012078928.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
swissprot
ID Q9ZQE5
description Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2
trembl
ID F6HQB8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 023_H04.ab1: 279026-279766

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000457_260 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
2 Hb_000347_180 0.0463018556 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
3 Hb_004935_030 0.0621025101 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
4 Hb_123352_020 0.0621969767 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
5 Hb_003362_070 0.0633670037 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
6 Hb_172632_080 0.066155481 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
7 Hb_001700_040 0.066879151 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
8 Hb_001329_140 0.0677464284 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
9 Hb_000173_490 0.0678428553 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
10 Hb_000127_040 0.068881673 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
11 Hb_001198_100 0.070955599 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
12 Hb_000820_170 0.0724582059 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
13 Hb_001199_100 0.072509168 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
14 Hb_048476_180 0.0733800966 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
15 Hb_016898_010 0.0733884113 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
16 Hb_000101_240 0.0737689858 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
17 Hb_001409_020 0.0743855831 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
18 Hb_000343_120 0.074897357 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
19 Hb_000035_290 0.0752051371 - - RNA recognition motif-containing family protein [Populus trichocarpa]
20 Hb_009548_020 0.0773098462 - - structural constituent of cell wall, putative [Ricinus communis]

Gene co-expression network

sample Hb_000457_260 Hb_000457_260 Hb_000347_180 Hb_000347_180 Hb_000457_260--Hb_000347_180 Hb_004935_030 Hb_004935_030 Hb_000457_260--Hb_004935_030 Hb_123352_020 Hb_123352_020 Hb_000457_260--Hb_123352_020 Hb_003362_070 Hb_003362_070 Hb_000457_260--Hb_003362_070 Hb_172632_080 Hb_172632_080 Hb_000457_260--Hb_172632_080 Hb_001700_040 Hb_001700_040 Hb_000457_260--Hb_001700_040 Hb_001097_050 Hb_001097_050 Hb_000347_180--Hb_001097_050 Hb_000347_180--Hb_123352_020 Hb_002255_030 Hb_002255_030 Hb_000347_180--Hb_002255_030 Hb_000347_180--Hb_004935_030 Hb_001377_270 Hb_001377_270 Hb_000347_180--Hb_001377_270 Hb_004935_030--Hb_003362_070 Hb_000083_160 Hb_000083_160 Hb_004935_030--Hb_000083_160 Hb_003371_110 Hb_003371_110 Hb_004935_030--Hb_003371_110 Hb_001617_060 Hb_001617_060 Hb_004935_030--Hb_001617_060 Hb_007576_110 Hb_007576_110 Hb_004935_030--Hb_007576_110 Hb_001143_160 Hb_001143_160 Hb_123352_020--Hb_001143_160 Hb_000487_290 Hb_000487_290 Hb_123352_020--Hb_000487_290 Hb_007163_090 Hb_007163_090 Hb_123352_020--Hb_007163_090 Hb_000225_040 Hb_000225_040 Hb_123352_020--Hb_000225_040 Hb_005731_030 Hb_005731_030 Hb_123352_020--Hb_005731_030 Hb_016898_010 Hb_016898_010 Hb_003362_070--Hb_016898_010 Hb_048476_180 Hb_048476_180 Hb_003362_070--Hb_048476_180 Hb_003966_030 Hb_003966_030 Hb_003362_070--Hb_003966_030 Hb_000922_370 Hb_000922_370 Hb_003362_070--Hb_000922_370 Hb_003044_020 Hb_003044_020 Hb_003362_070--Hb_003044_020 Hb_009218_010 Hb_009218_010 Hb_172632_080--Hb_009218_010 Hb_000072_220 Hb_000072_220 Hb_172632_080--Hb_000072_220 Hb_001199_100 Hb_001199_100 Hb_172632_080--Hb_001199_100 Hb_009548_020 Hb_009548_020 Hb_172632_080--Hb_009548_020 Hb_188063_020 Hb_188063_020 Hb_172632_080--Hb_188063_020 Hb_000318_510 Hb_000318_510 Hb_001700_040--Hb_000318_510 Hb_000283_070 Hb_000283_070 Hb_001700_040--Hb_000283_070 Hb_000878_010 Hb_000878_010 Hb_001700_040--Hb_000878_010 Hb_005679_050 Hb_005679_050 Hb_001700_040--Hb_005679_050 Hb_000101_240 Hb_000101_240 Hb_001700_040--Hb_000101_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.3159 6.01091 2.58934 4.39866 5.11087 9.07157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.2049 4.00433 5.82962 5.00485 4.65134

CAGE analysis