Hb_000460_030

Information

Type -
Description -
Location Contig460: 51901-60391
Sequence    

Annotation

kegg
ID rcu:RCOM_0642840
description 4-hydroxybenzoate octaprenyltransferase, putative
nr
ID XP_002521942.1
description 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
swissprot
ID Q93YP7
description 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Arabidopsis thaliana GN=PPT1 PE=2 SV=1
trembl
ID B9S7H3
description 4-hydroxybenzoate octaprenyltransferase, putative OS=Ricinus communis GN=RCOM_0642840 PE=4 SV=1
Gene Ontology
ID GO:0004659
description 4-hydroxybenzoate mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43677: 51848-60008
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000460_030 0.0 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
2 Hb_006570_080 0.062826938 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
3 Hb_000431_170 0.0631772011 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
4 Hb_003582_060 0.0663895253 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
5 Hb_000483_260 0.0672253562 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
6 Hb_005588_060 0.0678603616 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
7 Hb_008725_230 0.0680606326 - - PREDICTED: CTP synthase [Jatropha curcas]
8 Hb_000853_150 0.0688743552 - - Fumarase 1 isoform 2 [Theobroma cacao]
9 Hb_000003_230 0.0699370851 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
10 Hb_010098_050 0.0712367319 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
11 Hb_002301_150 0.0712993228 - - Drought-responsive family protein [Theobroma cacao]
12 Hb_000684_380 0.072126352 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
13 Hb_000030_030 0.0733607368 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
14 Hb_006615_240 0.0737466233 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
15 Hb_000948_160 0.0738680121 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
16 Hb_002007_080 0.0744294478 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
17 Hb_003304_020 0.074507111 - - Polyadenylate-binding protein RBP47C [Glycine soja]
18 Hb_001359_050 0.0745870747 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001218_030 0.0765497221 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
20 Hb_001123_040 0.0770749022 - - PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000460_030 Hb_000460_030 Hb_006570_080 Hb_006570_080 Hb_000460_030--Hb_006570_080 Hb_000431_170 Hb_000431_170 Hb_000460_030--Hb_000431_170 Hb_003582_060 Hb_003582_060 Hb_000460_030--Hb_003582_060 Hb_000483_260 Hb_000483_260 Hb_000460_030--Hb_000483_260 Hb_005588_060 Hb_005588_060 Hb_000460_030--Hb_005588_060 Hb_008725_230 Hb_008725_230 Hb_000460_030--Hb_008725_230 Hb_002936_010 Hb_002936_010 Hb_006570_080--Hb_002936_010 Hb_001359_050 Hb_001359_050 Hb_006570_080--Hb_001359_050 Hb_006570_080--Hb_005588_060 Hb_000173_280 Hb_000173_280 Hb_006570_080--Hb_000173_280 Hb_168978_010 Hb_168978_010 Hb_006570_080--Hb_168978_010 Hb_000948_160 Hb_000948_160 Hb_000431_170--Hb_000948_160 Hb_006693_020 Hb_006693_020 Hb_000431_170--Hb_006693_020 Hb_000081_160 Hb_000081_160 Hb_000431_170--Hb_000081_160 Hb_000390_300 Hb_000390_300 Hb_000431_170--Hb_000390_300 Hb_010098_050 Hb_010098_050 Hb_000431_170--Hb_010098_050 Hb_006615_240 Hb_006615_240 Hb_003582_060--Hb_006615_240 Hb_000003_230 Hb_000003_230 Hb_003582_060--Hb_000003_230 Hb_003304_020 Hb_003304_020 Hb_003582_060--Hb_003304_020 Hb_000221_190 Hb_000221_190 Hb_003582_060--Hb_000221_190 Hb_017895_040 Hb_017895_040 Hb_003582_060--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_003582_060--Hb_001300_150 Hb_003994_260 Hb_003994_260 Hb_000483_260--Hb_003994_260 Hb_000787_020 Hb_000787_020 Hb_000483_260--Hb_000787_020 Hb_001218_030 Hb_001218_030 Hb_000483_260--Hb_001218_030 Hb_005306_180 Hb_005306_180 Hb_000483_260--Hb_005306_180 Hb_001314_070 Hb_001314_070 Hb_000483_260--Hb_001314_070 Hb_003058_120 Hb_003058_120 Hb_005588_060--Hb_003058_120 Hb_005588_060--Hb_002936_010 Hb_004108_220 Hb_004108_220 Hb_005588_060--Hb_004108_220 Hb_005588_060--Hb_000173_280 Hb_023001_040 Hb_023001_040 Hb_005588_060--Hb_023001_040 Hb_002232_410 Hb_002232_410 Hb_008725_230--Hb_002232_410 Hb_008725_230--Hb_001359_050 Hb_001205_240 Hb_001205_240 Hb_008725_230--Hb_001205_240 Hb_004324_130 Hb_004324_130 Hb_008725_230--Hb_004324_130 Hb_000185_030 Hb_000185_030 Hb_008725_230--Hb_000185_030 Hb_000028_370 Hb_000028_370 Hb_008725_230--Hb_000028_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.17717 3.12721 4.03866 3.93422 2.68717 2.65034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.90689 5.69653 4.47305 5.18399 3.00857

CAGE analysis