Hb_000460_060

Information

Type -
Description -
Location Contig460: 107929-113263
Sequence    

Annotation

kegg
ID rcu:RCOM_0736490
description importin beta-1, putative
nr
ID XP_002526256.1
description importin beta-1, putative [Ricinus communis]
swissprot
ID Q9FJD4
description Importin subunit beta-1 OS=Arabidopsis thaliana GN=KPNB1 PE=1 SV=1
trembl
ID B9SJT7
description Importin beta-1, putative OS=Ricinus communis GN=RCOM_0736490 PE=4 SV=1
Gene Ontology
ID GO:0005634
description importin subunit beta-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43679: 107865-112738
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000460_060 0.0 - - importin beta-1, putative [Ricinus communis]
2 Hb_003605_220 0.0808366894 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
3 Hb_002387_070 0.0840891696 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
4 Hb_044653_020 0.0862995571 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
5 Hb_001410_130 0.0971689324 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
6 Hb_000941_080 0.0976312569 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
7 Hb_006054_030 0.1001976821 - - PREDICTED: protein GPR107-like [Jatropha curcas]
8 Hb_000252_210 0.1004482821 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
9 Hb_004785_030 0.1016735565 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
10 Hb_020805_150 0.1036818894 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_012368_100 0.1103696492 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
12 Hb_004994_300 0.1111388298 - - synaptotagmin, putative [Ricinus communis]
13 Hb_012490_010 0.1116740813 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
14 Hb_008686_020 0.1170081187 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
15 Hb_005188_040 0.1179297717 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
16 Hb_002119_090 0.1204883603 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
17 Hb_002928_190 0.1205667075 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
18 Hb_000270_230 0.1213007833 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
19 Hb_004696_070 0.121722349 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
20 Hb_000805_230 0.1221682478 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]

Gene co-expression network

sample Hb_000460_060 Hb_000460_060 Hb_003605_220 Hb_003605_220 Hb_000460_060--Hb_003605_220 Hb_002387_070 Hb_002387_070 Hb_000460_060--Hb_002387_070 Hb_044653_020 Hb_044653_020 Hb_000460_060--Hb_044653_020 Hb_001410_130 Hb_001410_130 Hb_000460_060--Hb_001410_130 Hb_000941_080 Hb_000941_080 Hb_000460_060--Hb_000941_080 Hb_006054_030 Hb_006054_030 Hb_000460_060--Hb_006054_030 Hb_004994_300 Hb_004994_300 Hb_003605_220--Hb_004994_300 Hb_008686_020 Hb_008686_020 Hb_003605_220--Hb_008686_020 Hb_004696_070 Hb_004696_070 Hb_003605_220--Hb_004696_070 Hb_012490_010 Hb_012490_010 Hb_003605_220--Hb_012490_010 Hb_001951_100 Hb_001951_100 Hb_003605_220--Hb_001951_100 Hb_012368_100 Hb_012368_100 Hb_002387_070--Hb_012368_100 Hb_002387_070--Hb_044653_020 Hb_000896_060 Hb_000896_060 Hb_002387_070--Hb_000896_060 Hb_000117_070 Hb_000117_070 Hb_002387_070--Hb_000117_070 Hb_000526_060 Hb_000526_060 Hb_002387_070--Hb_000526_060 Hb_044653_020--Hb_012368_100 Hb_044653_020--Hb_000896_060 Hb_004785_030 Hb_004785_030 Hb_044653_020--Hb_004785_030 Hb_044653_020--Hb_000117_070 Hb_005188_040 Hb_005188_040 Hb_044653_020--Hb_005188_040 Hb_001410_130--Hb_000941_080 Hb_001009_090 Hb_001009_090 Hb_001410_130--Hb_001009_090 Hb_001911_010 Hb_001911_010 Hb_001410_130--Hb_001911_010 Hb_001410_130--Hb_006054_030 Hb_002119_090 Hb_002119_090 Hb_001410_130--Hb_002119_090 Hb_001410_130--Hb_044653_020 Hb_000941_080--Hb_006054_030 Hb_000941_080--Hb_001911_010 Hb_000941_080--Hb_001009_090 Hb_000941_080--Hb_002119_090 Hb_000270_230 Hb_000270_230 Hb_000941_080--Hb_000270_230 Hb_001369_780 Hb_001369_780 Hb_006054_030--Hb_001369_780 Hb_000069_780 Hb_000069_780 Hb_006054_030--Hb_000069_780 Hb_006054_030--Hb_000270_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.00997 63.4596 13.9894 24.186 17.3539 12.2218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.39434 7.35419 15.8834 14.1852 19.83

CAGE analysis