Hb_000460_070

Information

Type -
Description -
Location Contig460: 127732-131256
Sequence    

Annotation

kegg
ID tcc:TCM_016516
description Heat shock protein 70 (Hsp 70) family protein
nr
ID ACJ11746.1
description luminal binding protein [Gossypium hirsutum]
swissprot
ID Q03685
description Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1
trembl
ID D2D326
description Luminal binding protein OS=Gossypium hirsutum PE=2 SV=1
Gene Ontology
ID GO:0005788
description luminal-binding protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43680: 128438-130715
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000460_070 0.0 - - luminal binding protein [Gossypium hirsutum]
2 Hb_008698_010 0.1240429022 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_001229_020 0.1278716671 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
4 Hb_000683_080 0.1614842303 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
5 Hb_001621_060 0.1694804074 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
6 Hb_000189_520 0.172112491 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
7 Hb_007054_050 0.1839670284 - - -
8 Hb_001792_030 0.1867881126 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
9 Hb_002534_030 0.1876688995 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
10 Hb_000058_080 0.18874161 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_003124_110 0.1980546306 - - hypothetical protein VITISV_026680 [Vitis vinifera]
12 Hb_004218_260 0.1985919162 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
13 Hb_000866_050 0.200827588 - - phosphate transporter [Manihot esculenta]
14 Hb_000012_160 0.2017004307 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
15 Hb_005167_020 0.203000046 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
16 Hb_002360_030 0.2054746046 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
17 Hb_181026_010 0.2058068984 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
18 Hb_001484_080 0.2069771213 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
19 Hb_140459_010 0.2098719365 - - thioredoxin f-type, putative [Ricinus communis]
20 Hb_005282_020 0.2105784185 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]

Gene co-expression network

sample Hb_000460_070 Hb_000460_070 Hb_008698_010 Hb_008698_010 Hb_000460_070--Hb_008698_010 Hb_001229_020 Hb_001229_020 Hb_000460_070--Hb_001229_020 Hb_000683_080 Hb_000683_080 Hb_000460_070--Hb_000683_080 Hb_001621_060 Hb_001621_060 Hb_000460_070--Hb_001621_060 Hb_000189_520 Hb_000189_520 Hb_000460_070--Hb_000189_520 Hb_007054_050 Hb_007054_050 Hb_000460_070--Hb_007054_050 Hb_008698_010--Hb_001621_060 Hb_002534_030 Hb_002534_030 Hb_008698_010--Hb_002534_030 Hb_001792_030 Hb_001792_030 Hb_008698_010--Hb_001792_030 Hb_008698_010--Hb_001229_020 Hb_002078_300 Hb_002078_300 Hb_008698_010--Hb_002078_300 Hb_003124_110 Hb_003124_110 Hb_001229_020--Hb_003124_110 Hb_001229_020--Hb_001621_060 Hb_001229_020--Hb_002078_300 Hb_001229_020--Hb_002534_030 Hb_007002_010 Hb_007002_010 Hb_000683_080--Hb_007002_010 Hb_000495_080 Hb_000495_080 Hb_000683_080--Hb_000495_080 Hb_000352_220 Hb_000352_220 Hb_000683_080--Hb_000352_220 Hb_000890_110 Hb_000890_110 Hb_000683_080--Hb_000890_110 Hb_003226_190 Hb_003226_190 Hb_000683_080--Hb_003226_190 Hb_000683_080--Hb_000189_520 Hb_001621_060--Hb_001792_030 Hb_010577_040 Hb_010577_040 Hb_001621_060--Hb_010577_040 Hb_001621_060--Hb_000189_520 Hb_004109_160 Hb_004109_160 Hb_001621_060--Hb_004109_160 Hb_003935_080 Hb_003935_080 Hb_001621_060--Hb_003935_080 Hb_000189_520--Hb_001792_030 Hb_000866_050 Hb_000866_050 Hb_000189_520--Hb_000866_050 Hb_000032_400 Hb_000032_400 Hb_000189_520--Hb_000032_400 Hb_000189_520--Hb_003935_080 Hb_011053_030 Hb_011053_030 Hb_000189_520--Hb_011053_030 Hb_002360_030 Hb_002360_030 Hb_007054_050--Hb_002360_030 Hb_007054_050--Hb_008698_010 Hb_007054_050--Hb_000683_080 Hb_000122_210 Hb_000122_210 Hb_007054_050--Hb_000122_210 Hb_004218_260 Hb_004218_260 Hb_007054_050--Hb_004218_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.16775 9.44636 21.1022 23.8084 6.31439 4.37306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.3856 28.5157 64.8065 37.1251 188.709

CAGE analysis