Hb_000462_040

Information

Type -
Description -
Location Contig462: 78477-84120
Sequence    

Annotation

kegg
ID rcu:RCOM_1352090
description ATSMC2, putative
nr
ID XP_002519423.1
description ATSMC2, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S0A4
description ATSMC2, putative OS=Ricinus communis GN=RCOM_1352090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43769: 78753-79742 , PASA_asmbl_43772: 82238-82637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000462_040 0.0 - - ATSMC2, putative [Ricinus communis]
2 Hb_007281_010 0.0531798299 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
3 Hb_001712_030 0.0574458019 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
4 Hb_001123_300 0.0642894275 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
5 Hb_034507_030 0.0646116673 - - PREDICTED: laccase-4-like [Jatropha curcas]
6 Hb_006483_020 0.0648745885 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
7 Hb_008705_080 0.0666672196 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
8 Hb_001014_180 0.0672674076 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
9 Hb_002311_010 0.0706377996 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
10 Hb_038927_020 0.0743550964 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
11 Hb_000311_100 0.0805707591 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004117_230 0.0837294866 - - lipid transfer precursor protein [Hevea brasiliensis]
13 Hb_026198_080 0.0849691433 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
14 Hb_004994_230 0.0872418931 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
15 Hb_005827_020 0.0874036488 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
16 Hb_028818_020 0.0876020352 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
17 Hb_000805_060 0.0877614882 - - laccase, putative [Ricinus communis]
18 Hb_007227_030 0.0899624157 - - hypothetical protein JCGZ_24975 [Jatropha curcas]
19 Hb_003972_070 0.0965371701 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
20 Hb_000165_260 0.0976051799 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000462_040 Hb_000462_040 Hb_007281_010 Hb_007281_010 Hb_000462_040--Hb_007281_010 Hb_001712_030 Hb_001712_030 Hb_000462_040--Hb_001712_030 Hb_001123_300 Hb_001123_300 Hb_000462_040--Hb_001123_300 Hb_034507_030 Hb_034507_030 Hb_000462_040--Hb_034507_030 Hb_006483_020 Hb_006483_020 Hb_000462_040--Hb_006483_020 Hb_008705_080 Hb_008705_080 Hb_000462_040--Hb_008705_080 Hb_002311_010 Hb_002311_010 Hb_007281_010--Hb_002311_010 Hb_038927_020 Hb_038927_020 Hb_007281_010--Hb_038927_020 Hb_001014_180 Hb_001014_180 Hb_007281_010--Hb_001014_180 Hb_007281_010--Hb_034507_030 Hb_007281_010--Hb_001712_030 Hb_001712_030--Hb_038927_020 Hb_001712_030--Hb_002311_010 Hb_000311_100 Hb_000311_100 Hb_001712_030--Hb_000311_100 Hb_000165_260 Hb_000165_260 Hb_001712_030--Hb_000165_260 Hb_008695_060 Hb_008695_060 Hb_001123_300--Hb_008695_060 Hb_028818_020 Hb_028818_020 Hb_001123_300--Hb_028818_020 Hb_001123_300--Hb_008705_080 Hb_001123_300--Hb_034507_030 Hb_000155_230 Hb_000155_230 Hb_001123_300--Hb_000155_230 Hb_004994_230 Hb_004994_230 Hb_034507_030--Hb_004994_230 Hb_034507_030--Hb_006483_020 Hb_034507_030--Hb_001014_180 Hb_000090_010 Hb_000090_010 Hb_034507_030--Hb_000090_010 Hb_006483_020--Hb_004994_230 Hb_004117_230 Hb_004117_230 Hb_006483_020--Hb_004117_230 Hb_006483_020--Hb_000090_010 Hb_006483_020--Hb_007281_010 Hb_002170_030 Hb_002170_030 Hb_008705_080--Hb_002170_030 Hb_026198_080 Hb_026198_080 Hb_008705_080--Hb_026198_080 Hb_000805_060 Hb_000805_060 Hb_008705_080--Hb_000805_060 Hb_001053_120 Hb_001053_120 Hb_008705_080--Hb_001053_120 Hb_009158_040 Hb_009158_040 Hb_008705_080--Hb_009158_040 Hb_006351_090 Hb_006351_090 Hb_008705_080--Hb_006351_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0128372 0.573339 0.461569 7.34754 0.00828512 0.00388258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0152522 0 0.060384 8.82057

CAGE analysis