Hb_000462_090

Information

Type -
Description -
Location Contig462: 124311-132191
Sequence    

Annotation

kegg
ID pop:POPTR_0006s12150g
description hypothetical protein
nr
ID XP_012082505.1
description PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
swissprot
ID Q6TBX7
description Carotene epsilon-monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=CYP97C1 PE=1 SV=1
trembl
ID A0A067JZ47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16600 PE=3 SV=1
Gene Ontology
ID GO:0005506
description carotene epsilon- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43785: 124829-131769 , PASA_asmbl_43786: 124402-131840 , PASA_asmbl_43787: 124402-131840
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000462_090 0.0 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
2 Hb_001584_200 0.0761406965 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
3 Hb_000173_250 0.0891461151 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
4 Hb_000340_150 0.0946343733 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
5 Hb_000172_580 0.0946924534 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_009775_010 0.0949606487 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
7 Hb_003376_230 0.0979409826 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
8 Hb_002217_260 0.1002683228 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
9 Hb_000928_010 0.1011242299 - - Cell division protein ftsZ, putative [Ricinus communis]
10 Hb_011512_110 0.1020577785 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000608_170 0.10499606 - - F23N19.4 [Arabidopsis thaliana]
12 Hb_000487_260 0.1075919459 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
13 Hb_011689_120 0.1097607702 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
14 Hb_005539_010 0.1103534995 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
15 Hb_018133_090 0.1126758689 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006538_120 0.1128750056 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
17 Hb_000028_110 0.112901896 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
18 Hb_006846_150 0.1129523074 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000107_570 0.1146372258 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
20 Hb_012022_150 0.115648881 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000462_090 Hb_000462_090 Hb_001584_200 Hb_001584_200 Hb_000462_090--Hb_001584_200 Hb_000173_250 Hb_000173_250 Hb_000462_090--Hb_000173_250 Hb_000340_150 Hb_000340_150 Hb_000462_090--Hb_000340_150 Hb_000172_580 Hb_000172_580 Hb_000462_090--Hb_000172_580 Hb_009775_010 Hb_009775_010 Hb_000462_090--Hb_009775_010 Hb_003376_230 Hb_003376_230 Hb_000462_090--Hb_003376_230 Hb_000224_160 Hb_000224_160 Hb_001584_200--Hb_000224_160 Hb_001584_200--Hb_003376_230 Hb_012022_150 Hb_012022_150 Hb_001584_200--Hb_012022_150 Hb_002374_240 Hb_002374_240 Hb_001584_200--Hb_002374_240 Hb_001584_200--Hb_000172_580 Hb_019053_060 Hb_019053_060 Hb_000173_250--Hb_019053_060 Hb_000173_250--Hb_009775_010 Hb_011689_120 Hb_011689_120 Hb_000173_250--Hb_011689_120 Hb_000487_260 Hb_000487_260 Hb_000173_250--Hb_000487_260 Hb_006846_150 Hb_006846_150 Hb_000173_250--Hb_006846_150 Hb_004375_050 Hb_004375_050 Hb_000340_150--Hb_004375_050 Hb_000529_180 Hb_000529_180 Hb_000340_150--Hb_000529_180 Hb_001277_100 Hb_001277_100 Hb_000340_150--Hb_001277_100 Hb_000811_070 Hb_000811_070 Hb_000340_150--Hb_000811_070 Hb_002078_340 Hb_002078_340 Hb_000340_150--Hb_002078_340 Hb_000172_580--Hb_003376_230 Hb_007192_070 Hb_007192_070 Hb_000172_580--Hb_007192_070 Hb_005800_030 Hb_005800_030 Hb_000172_580--Hb_005800_030 Hb_002496_020 Hb_002496_020 Hb_000172_580--Hb_002496_020 Hb_002014_030 Hb_002014_030 Hb_000172_580--Hb_002014_030 Hb_006538_120 Hb_006538_120 Hb_009775_010--Hb_006538_120 Hb_000221_140 Hb_000221_140 Hb_009775_010--Hb_000221_140 Hb_000580_150 Hb_000580_150 Hb_009775_010--Hb_000580_150 Hb_001410_070 Hb_001410_070 Hb_009775_010--Hb_001410_070 Hb_001660_120 Hb_001660_120 Hb_009775_010--Hb_001660_120 Hb_000212_440 Hb_000212_440 Hb_003376_230--Hb_000212_440 Hb_011512_110 Hb_011512_110 Hb_003376_230--Hb_011512_110 Hb_003153_010 Hb_003153_010 Hb_003376_230--Hb_003153_010 Hb_005405_020 Hb_005405_020 Hb_003376_230--Hb_005405_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.11117 2.10608 7.7437 4.16827 4.72065 4.72669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.57968 7.7223 6.43039 3.16218 15.2994

CAGE analysis