Hb_000462_120

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig462: 147637-148797
Sequence    

Annotation

kegg
ID rcu:RCOM_1352570
description protein with unknown function
nr
ID XP_012082501.1
description PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
swissprot
ID P0CB19
description Uncharacterized protein At3g50808 OS=Arabidopsis thaliana GN=At3g50808 PE=4 SV=1
trembl
ID B9S0B2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1352570 PE=4 SV=1
Gene Ontology
ID GO:0005622
description PREDICTED: uncharacterized protein LOC105642310

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43790: 147685-149027
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000462_120 0.0 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
2 Hb_005616_020 0.0466389436 - - kinase, putative [Ricinus communis]
3 Hb_003580_020 0.0526415951 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005291_020 0.0641436873 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000729_040 0.0668609018 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
6 Hb_001456_030 0.0708818861 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
7 Hb_027577_010 0.0774276176 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
8 Hb_000497_030 0.0799577723 - - -
9 Hb_001856_250 0.0814044156 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
10 Hb_000699_220 0.0824878998 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
11 Hb_006717_060 0.0851295156 - - PREDICTED: peroxidase 42 [Jatropha curcas]
12 Hb_000483_340 0.0853681683 - - conserved hypothetical protein [Ricinus communis]
13 Hb_031330_010 0.0855866202 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
14 Hb_000581_010 0.085605355 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
15 Hb_000487_350 0.0864884261 - - conserved hypothetical protein [Ricinus communis]
16 Hb_180518_010 0.0871245699 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
17 Hb_000413_030 0.0894418299 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
18 Hb_000608_090 0.0930089544 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000188_040 0.0941406868 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
20 Hb_004884_040 0.0943398664 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]

Gene co-expression network

sample Hb_000462_120 Hb_000462_120 Hb_005616_020 Hb_005616_020 Hb_000462_120--Hb_005616_020 Hb_003580_020 Hb_003580_020 Hb_000462_120--Hb_003580_020 Hb_005291_020 Hb_005291_020 Hb_000462_120--Hb_005291_020 Hb_000729_040 Hb_000729_040 Hb_000462_120--Hb_000729_040 Hb_001456_030 Hb_001456_030 Hb_000462_120--Hb_001456_030 Hb_027577_010 Hb_027577_010 Hb_000462_120--Hb_027577_010 Hb_005616_020--Hb_001456_030 Hb_003376_060 Hb_003376_060 Hb_005616_020--Hb_003376_060 Hb_000699_220 Hb_000699_220 Hb_005616_020--Hb_000699_220 Hb_000413_030 Hb_000413_030 Hb_005616_020--Hb_000413_030 Hb_000608_090 Hb_000608_090 Hb_005616_020--Hb_000608_090 Hb_003580_020--Hb_005291_020 Hb_006717_060 Hb_006717_060 Hb_003580_020--Hb_006717_060 Hb_000497_030 Hb_000497_030 Hb_003580_020--Hb_000497_030 Hb_003580_020--Hb_000699_220 Hb_002014_130 Hb_002014_130 Hb_003580_020--Hb_002014_130 Hb_005291_020--Hb_002014_130 Hb_180518_010 Hb_180518_010 Hb_005291_020--Hb_180518_010 Hb_005291_020--Hb_027577_010 Hb_005291_020--Hb_000497_030 Hb_001856_250 Hb_001856_250 Hb_000729_040--Hb_001856_250 Hb_000487_350 Hb_000487_350 Hb_000729_040--Hb_000487_350 Hb_000729_040--Hb_027577_010 Hb_000581_010 Hb_000581_010 Hb_000729_040--Hb_000581_010 Hb_000483_340 Hb_000483_340 Hb_000729_040--Hb_000483_340 Hb_001456_030--Hb_003376_060 Hb_000227_360 Hb_000227_360 Hb_001456_030--Hb_000227_360 Hb_001104_060 Hb_001104_060 Hb_001456_030--Hb_001104_060 Hb_000964_080 Hb_000964_080 Hb_001456_030--Hb_000964_080 Hb_027577_010--Hb_180518_010 Hb_027577_010--Hb_000487_350 Hb_027577_010--Hb_000581_010 Hb_027577_010--Hb_001856_250 Hb_027577_010--Hb_000483_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.309533 1.68477 23.1019 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.383461 6.7198

CAGE analysis