Hb_000462_130

Information

Type -
Description -
Location Contig462: 156206-159662
Sequence    

Annotation

kegg
ID cic:CICLE_v10009355mg
description hypothetical protein
nr
ID XP_006452879.1
description hypothetical protein CICLE_v10009355mg [Citrus clementina]
swissprot
ID Q3EBL9
description Vacuolar protein-sorting-associated protein 37 homolog 2 OS=Arabidopsis thaliana GN=VPS37-2 PE=1 SV=1
trembl
ID V4WHD4
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009355mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43791: 156241-159643 , PASA_asmbl_43792: 158084-158570 , PASA_asmbl_43793: 158791-158899 , PASA_asmbl_43794: 157140-157445
cDNA
(Sanger)
(ID:Location)		 007_A04.ab1: 156295-159438 , 016_B13.ab1: 156295-159397 , 016_O13.ab1: 156250-159271

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000462_130 0.0 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
2 Hb_001534_050 0.0652810469 - - PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
3 Hb_004453_170 0.0718872697 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
4 Hb_001832_060 0.0773083635 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
5 Hb_028995_040 0.0820443348 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
6 Hb_000698_030 0.0824508008 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
7 Hb_003078_040 0.0853413795 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
8 Hb_003125_200 0.0864848015 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
9 Hb_002016_150 0.0879229866 - - PREDICTED: uncharacterized protein LOC105642512 [Jatropha curcas]
10 Hb_145880_030 0.0900922486 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
11 Hb_029388_020 0.0901566174 - - conserved hypothetical protein [Ricinus communis]
12 Hb_030736_080 0.0925594373 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003747_220 0.0928181125 - - PREDICTED: syntaxin-22-like isoform X2 [Jatropha curcas]
14 Hb_010560_020 0.0962839901 - - PREDICTED: uncharacterized protein LOC105649267 [Jatropha curcas]
15 Hb_001534_120 0.0969057009 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
16 Hb_012286_030 0.0974175274 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
17 Hb_002110_120 0.0983486003 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
18 Hb_001269_630 0.0983691191 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
19 Hb_004116_190 0.0992486124 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
20 Hb_007317_150 0.0994583945 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]

Gene co-expression network

sample Hb_000462_130 Hb_000462_130 Hb_001534_050 Hb_001534_050 Hb_000462_130--Hb_001534_050 Hb_004453_170 Hb_004453_170 Hb_000462_130--Hb_004453_170 Hb_001832_060 Hb_001832_060 Hb_000462_130--Hb_001832_060 Hb_028995_040 Hb_028995_040 Hb_000462_130--Hb_028995_040 Hb_000698_030 Hb_000698_030 Hb_000462_130--Hb_000698_030 Hb_003078_040 Hb_003078_040 Hb_000462_130--Hb_003078_040 Hb_003125_200 Hb_003125_200 Hb_001534_050--Hb_003125_200 Hb_001534_050--Hb_028995_040 Hb_004491_010 Hb_004491_010 Hb_001534_050--Hb_004491_010 Hb_000771_120 Hb_000771_120 Hb_001534_050--Hb_000771_120 Hb_001534_050--Hb_003078_040 Hb_004453_170--Hb_001832_060 Hb_001195_480 Hb_001195_480 Hb_004453_170--Hb_001195_480 Hb_000260_550 Hb_000260_550 Hb_004453_170--Hb_000260_550 Hb_001123_130 Hb_001123_130 Hb_004453_170--Hb_001123_130 Hb_000527_060 Hb_000527_060 Hb_004453_170--Hb_000527_060 Hb_001832_060--Hb_000698_030 Hb_000127_180 Hb_000127_180 Hb_001832_060--Hb_000127_180 Hb_004116_190 Hb_004116_190 Hb_001832_060--Hb_004116_190 Hb_001047_230 Hb_001047_230 Hb_001832_060--Hb_001047_230 Hb_001269_630 Hb_001269_630 Hb_001832_060--Hb_001269_630 Hb_001552_020 Hb_001552_020 Hb_028995_040--Hb_001552_020 Hb_000866_270 Hb_000866_270 Hb_028995_040--Hb_000866_270 Hb_028995_040--Hb_004491_010 Hb_004657_050 Hb_004657_050 Hb_028995_040--Hb_004657_050 Hb_028995_040--Hb_003078_040 Hb_002301_140 Hb_002301_140 Hb_028995_040--Hb_002301_140 Hb_001235_190 Hb_001235_190 Hb_000698_030--Hb_001235_190 Hb_000698_030--Hb_000866_270 Hb_000698_030--Hb_028995_040 Hb_000698_030--Hb_001269_630 Hb_003078_040--Hb_000866_270 Hb_025645_010 Hb_025645_010 Hb_003078_040--Hb_025645_010 Hb_000367_200 Hb_000367_200 Hb_003078_040--Hb_000367_200 Hb_003687_230 Hb_003687_230 Hb_003078_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003078_040--Hb_002233_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.3404 41.9773 47.5016 27.61 49.1318 32.5164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.584 89.7738 44.0438 25.5402 13.2413

CAGE analysis