Hb_000462_150

Information

Type -
Description -
Location Contig462: 164313-170195
Sequence    

Annotation

kegg
ID pop:POPTR_0006s12060g
description hypothetical protein
nr
ID XP_012082496.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
swissprot
ID Q93ZG7
description DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana GN=RH38 PE=1 SV=2
trembl
ID A0A067KAE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16594 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 38

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43800: 164196-170170 , PASA_asmbl_43801: 166402-166555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000462_150 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
2 Hb_003384_030 0.0463044233 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
3 Hb_001969_040 0.0505707029 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
4 Hb_002818_040 0.0536638694 - - tRNA synthetase-related family protein [Populus trichocarpa]
5 Hb_000230_330 0.0638583548 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
6 Hb_001584_110 0.0679716482 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
7 Hb_000001_180 0.0680879166 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
8 Hb_018663_020 0.069039445 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
9 Hb_000076_080 0.0706618731 - - PREDICTED: protein MOS2 [Jatropha curcas]
10 Hb_005914_230 0.0707684024 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
11 Hb_011496_010 0.0726105497 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
12 Hb_002169_010 0.072732376 - - PREDICTED: la-related protein 6B [Jatropha curcas]
13 Hb_000186_280 0.0732981721 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
14 Hb_001504_160 0.0737119602 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
15 Hb_004310_060 0.0755122125 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_000340_510 0.0756134152 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
17 Hb_004324_280 0.0762503632 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
18 Hb_042083_070 0.0774262462 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
19 Hb_000077_050 0.0777825109 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_002874_070 0.0778135675 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]

Gene co-expression network

sample Hb_000462_150 Hb_000462_150 Hb_003384_030 Hb_003384_030 Hb_000462_150--Hb_003384_030 Hb_001969_040 Hb_001969_040 Hb_000462_150--Hb_001969_040 Hb_002818_040 Hb_002818_040 Hb_000462_150--Hb_002818_040 Hb_000230_330 Hb_000230_330 Hb_000462_150--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_000462_150--Hb_001584_110 Hb_000001_180 Hb_000001_180 Hb_000462_150--Hb_000001_180 Hb_003384_030--Hb_000001_180 Hb_005914_230 Hb_005914_230 Hb_003384_030--Hb_005914_230 Hb_003384_030--Hb_002818_040 Hb_018663_020 Hb_018663_020 Hb_003384_030--Hb_018663_020 Hb_003384_030--Hb_001969_040 Hb_000186_280 Hb_000186_280 Hb_001969_040--Hb_000186_280 Hb_001969_040--Hb_018663_020 Hb_004324_280 Hb_004324_280 Hb_001969_040--Hb_004324_280 Hb_001969_040--Hb_002818_040 Hb_000340_510 Hb_000340_510 Hb_002818_040--Hb_000340_510 Hb_002818_040--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_002818_040--Hb_005314_010 Hb_002818_040--Hb_005914_230 Hb_000230_330--Hb_001584_110 Hb_000390_060 Hb_000390_060 Hb_000230_330--Hb_000390_060 Hb_001504_160 Hb_001504_160 Hb_000230_330--Hb_001504_160 Hb_003434_060 Hb_003434_060 Hb_000230_330--Hb_003434_060 Hb_000076_080 Hb_000076_080 Hb_000230_330--Hb_000076_080 Hb_002874_070 Hb_002874_070 Hb_001584_110--Hb_002874_070 Hb_014568_030 Hb_014568_030 Hb_001584_110--Hb_014568_030 Hb_011282_030 Hb_011282_030 Hb_001584_110--Hb_011282_030 Hb_001584_110--Hb_000390_060 Hb_004724_360 Hb_004724_360 Hb_000001_180--Hb_004724_360 Hb_000001_180--Hb_005914_230 Hb_000001_180--Hb_005314_010 Hb_004678_020 Hb_004678_020 Hb_000001_180--Hb_004678_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
462.929 136.268 82.8743 81.1166 417.681 518.242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
245.851 161.946 249.904 123.845 50.351

CAGE analysis