Hb_000462_170

Information

Type -
Description -
Location Contig462: 190976-219257
Sequence    

Annotation

kegg
ID rcu:RCOM_1353290
description hypothetical protein
nr
ID XP_002519443.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4IP13
description Protein SHOOT GRAVITROPISM 6 OS=Arabidopsis thaliana GN=SGR6 PE=2 SV=1
trembl
ID B9S0C4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1353290 PE=4 SV=1
Gene Ontology
ID GO:0005488
description protein shoot gravitropism 6 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43806: 199648-206686 , PASA_asmbl_43807: 207583-208946 , PASA_asmbl_43808: 209544-214153 , PASA_asmbl_43809: 214425-219105
cDNA
(Sanger)
(ID:Location)		 017_M10.ab1: 190942-191118

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000462_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004450_040 0.0513303196 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
3 Hb_000708_030 0.0752754284 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
4 Hb_006831_140 0.0757969054 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
5 Hb_000317_050 0.0763727158 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
6 Hb_001301_150 0.0778377117 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
7 Hb_001946_400 0.0805138507 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
8 Hb_033642_090 0.0806034486 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001021_150 0.0807280613 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
10 Hb_002461_060 0.0809247383 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
11 Hb_000130_410 0.081147341 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
12 Hb_006520_040 0.0811592957 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
13 Hb_003294_070 0.0817503258 - - hypothetical protein RCOM_1714550 [Ricinus communis]
14 Hb_000075_040 0.0819305897 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
15 Hb_000069_380 0.0850837068 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
16 Hb_001470_030 0.0855622967 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
17 Hb_006198_120 0.085921831 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
18 Hb_000025_410 0.0861173125 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
19 Hb_001225_040 0.0874218376 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
20 Hb_003878_070 0.0875725809 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000462_170 Hb_000462_170 Hb_004450_040 Hb_004450_040 Hb_000462_170--Hb_004450_040 Hb_000708_030 Hb_000708_030 Hb_000462_170--Hb_000708_030 Hb_006831_140 Hb_006831_140 Hb_000462_170--Hb_006831_140 Hb_000317_050 Hb_000317_050 Hb_000462_170--Hb_000317_050 Hb_001301_150 Hb_001301_150 Hb_000462_170--Hb_001301_150 Hb_001946_400 Hb_001946_400 Hb_000462_170--Hb_001946_400 Hb_000075_040 Hb_000075_040 Hb_004450_040--Hb_000075_040 Hb_004450_040--Hb_001946_400 Hb_001021_150 Hb_001021_150 Hb_004450_040--Hb_001021_150 Hb_004450_040--Hb_001301_150 Hb_004450_040--Hb_000708_030 Hb_000708_030--Hb_006831_140 Hb_003680_120 Hb_003680_120 Hb_000708_030--Hb_003680_120 Hb_000699_030 Hb_000699_030 Hb_000708_030--Hb_000699_030 Hb_000327_270 Hb_000327_270 Hb_000708_030--Hb_000327_270 Hb_005730_040 Hb_005730_040 Hb_000708_030--Hb_005730_040 Hb_093458_040 Hb_093458_040 Hb_000708_030--Hb_093458_040 Hb_000078_120 Hb_000078_120 Hb_006831_140--Hb_000078_120 Hb_006831_140--Hb_093458_040 Hb_001876_050 Hb_001876_050 Hb_006831_140--Hb_001876_050 Hb_006831_140--Hb_001021_150 Hb_002078_350 Hb_002078_350 Hb_006831_140--Hb_002078_350 Hb_002592_060 Hb_002592_060 Hb_000317_050--Hb_002592_060 Hb_001546_080 Hb_001546_080 Hb_000317_050--Hb_001546_080 Hb_001307_220 Hb_001307_220 Hb_000317_050--Hb_001307_220 Hb_000329_710 Hb_000329_710 Hb_000317_050--Hb_000329_710 Hb_000318_250 Hb_000318_250 Hb_000317_050--Hb_000318_250 Hb_002263_020 Hb_002263_020 Hb_000317_050--Hb_002263_020 Hb_003883_060 Hb_003883_060 Hb_001301_150--Hb_003883_060 Hb_000138_100 Hb_000138_100 Hb_001301_150--Hb_000138_100 Hb_004319_080 Hb_004319_080 Hb_001301_150--Hb_004319_080 Hb_001301_150--Hb_001876_050 Hb_000329_800 Hb_000329_800 Hb_001301_150--Hb_000329_800 Hb_183510_020 Hb_183510_020 Hb_001301_150--Hb_183510_020 Hb_001946_400--Hb_001021_150 Hb_014834_150 Hb_014834_150 Hb_001946_400--Hb_014834_150 Hb_001599_040 Hb_001599_040 Hb_001946_400--Hb_001599_040 Hb_002553_060 Hb_002553_060 Hb_001946_400--Hb_002553_060 Hb_008847_030 Hb_008847_030 Hb_001946_400--Hb_008847_030 Hb_007416_340 Hb_007416_340 Hb_001946_400--Hb_007416_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.84202 5.72255 4.82514 4.35045 4.89138 5.65273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.33818 7.07781 3.30033 7.33188 7.04504

CAGE analysis