Hb_000462_190

Information

Type -
Description -
Location Contig462: 246429-253649
Sequence    

Annotation

kegg
ID rcu:RCOM_1353310
description Protein P21, putative
nr
ID XP_012081402.1
description PREDICTED: thaumatin-like protein 1 [Jatropha curcas]
swissprot
ID P83336
description Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1
trembl
ID B9S0C6
description Protein P21, putative OS=Ricinus communis GN=RCOM_1353310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000462_190 0.0 - - PREDICTED: thaumatin-like protein 1 [Jatropha curcas]
2 Hb_000329_010 0.1159055702 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
3 Hb_029142_040 0.1202492558 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
4 Hb_001769_070 0.1203989543 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
5 Hb_005545_110 0.123795536 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
6 Hb_001138_070 0.128758271 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
7 Hb_008175_050 0.1296403623 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
8 Hb_000076_280 0.1355950661 - - PREDICTED: pectinesterase-like [Populus euphratica]
9 Hb_152980_020 0.1358491589 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
10 Hb_001404_070 0.1396675299 - - sucrose synthase 4 [Hevea brasiliensis]
11 Hb_002809_080 0.1425624511 - - conserved hypothetical protein [Ricinus communis]
12 Hb_149055_010 0.1443572446 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
13 Hb_031224_010 0.1443635279 - - -
14 Hb_002518_020 0.1458021525 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
15 Hb_139461_010 0.149282549 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
16 Hb_001269_400 0.1497035376 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
17 Hb_027400_020 0.1501829912 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
18 Hb_000181_260 0.1517718532 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
19 Hb_003633_170 0.1543771545 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001677_090 0.1554697186 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]

Gene co-expression network

sample Hb_000462_190 Hb_000462_190 Hb_000329_010 Hb_000329_010 Hb_000462_190--Hb_000329_010 Hb_029142_040 Hb_029142_040 Hb_000462_190--Hb_029142_040 Hb_001769_070 Hb_001769_070 Hb_000462_190--Hb_001769_070 Hb_005545_110 Hb_005545_110 Hb_000462_190--Hb_005545_110 Hb_001138_070 Hb_001138_070 Hb_000462_190--Hb_001138_070 Hb_008175_050 Hb_008175_050 Hb_000462_190--Hb_008175_050 Hb_002809_080 Hb_002809_080 Hb_000329_010--Hb_002809_080 Hb_000076_280 Hb_000076_280 Hb_000329_010--Hb_000076_280 Hb_000329_010--Hb_001769_070 Hb_031224_010 Hb_031224_010 Hb_000329_010--Hb_031224_010 Hb_149055_010 Hb_149055_010 Hb_000329_010--Hb_149055_010 Hb_000419_140 Hb_000419_140 Hb_000329_010--Hb_000419_140 Hb_155444_010 Hb_155444_010 Hb_029142_040--Hb_155444_010 Hb_008021_040 Hb_008021_040 Hb_029142_040--Hb_008021_040 Hb_029142_040--Hb_001138_070 Hb_000645_160 Hb_000645_160 Hb_029142_040--Hb_000645_160 Hb_002518_020 Hb_002518_020 Hb_029142_040--Hb_002518_020 Hb_012395_050 Hb_012395_050 Hb_029142_040--Hb_012395_050 Hb_001769_070--Hb_000076_280 Hb_027400_020 Hb_027400_020 Hb_001769_070--Hb_027400_020 Hb_001769_070--Hb_002518_020 Hb_001769_070--Hb_000419_140 Hb_005000_280 Hb_005000_280 Hb_001769_070--Hb_005000_280 Hb_152980_020 Hb_152980_020 Hb_005545_110--Hb_152980_020 Hb_003633_170 Hb_003633_170 Hb_005545_110--Hb_003633_170 Hb_002750_040 Hb_002750_040 Hb_005545_110--Hb_002750_040 Hb_005545_110--Hb_031224_010 Hb_001404_070 Hb_001404_070 Hb_005545_110--Hb_001404_070 Hb_001728_130 Hb_001728_130 Hb_005545_110--Hb_001728_130 Hb_001138_070--Hb_149055_010 Hb_001138_070--Hb_008175_050 Hb_001138_070--Hb_000645_160 Hb_003656_090 Hb_003656_090 Hb_001138_070--Hb_003656_090 Hb_001138_070--Hb_000329_010 Hb_002641_140 Hb_002641_140 Hb_001138_070--Hb_002641_140 Hb_008175_050--Hb_003656_090 Hb_007017_100 Hb_007017_100 Hb_008175_050--Hb_007017_100 Hb_005731_070 Hb_005731_070 Hb_008175_050--Hb_005731_070 Hb_007386_030 Hb_007386_030 Hb_008175_050--Hb_007386_030 Hb_015001_030 Hb_015001_030 Hb_008175_050--Hb_015001_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0626753 0.186842 0.363843 1.13682 0.0352138 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.402843 0.424035

CAGE analysis