Hb_000463_120

Information

Type -
Description -
Location Contig463: 100552-104021
Sequence    

Annotation

kegg
ID tcc:TCM_042545
description LRR receptor-like serine/threonine-protein kinase, putative
nr
ID XP_007009030.1
description LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A061FKI4
description LRR receptor-like serine/threonine-protein kinase, putative OS=Theobroma cacao GN=TCM_042545 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000463_120 0.0 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
2 Hb_030565_100 0.1322399517 - - serine hydroxymethyltransferase, putative [Ricinus communis]
3 Hb_001404_070 0.1362237331 - - sucrose synthase 4 [Hevea brasiliensis]
4 Hb_002203_020 0.1388156675 - - conserved hypothetical protein [Ricinus communis]
5 Hb_029223_040 0.1422202378 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
6 Hb_000077_100 0.1437250702 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
7 Hb_009122_010 0.145581751 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_174541_030 0.1457444982 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
9 Hb_001329_180 0.1461736742 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
10 Hb_002701_030 0.1479964125 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
11 Hb_003376_140 0.149662868 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
12 Hb_000015_190 0.1498811698 - - PREDICTED: uncharacterized protein LOC105647810 [Jatropha curcas]
13 Hb_000297_140 0.1502256782 - - hypothetical protein RCOM_0293450 [Ricinus communis]
14 Hb_141194_020 0.1503052279 - - carbohydrate transporter, putative [Ricinus communis]
15 Hb_003607_090 0.1510700059 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
16 Hb_000120_940 0.1521704633 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
17 Hb_000003_110 0.1534571897 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
18 Hb_000910_030 0.1548458109 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009456_010 0.1589918748 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
20 Hb_003001_050 0.1593741949 - - hypothetical protein RCOM_1749890 [Ricinus communis]

Gene co-expression network

sample Hb_000463_120 Hb_000463_120 Hb_030565_100 Hb_030565_100 Hb_000463_120--Hb_030565_100 Hb_001404_070 Hb_001404_070 Hb_000463_120--Hb_001404_070 Hb_002203_020 Hb_002203_020 Hb_000463_120--Hb_002203_020 Hb_029223_040 Hb_029223_040 Hb_000463_120--Hb_029223_040 Hb_000077_100 Hb_000077_100 Hb_000463_120--Hb_000077_100 Hb_009122_010 Hb_009122_010 Hb_000463_120--Hb_009122_010 Hb_030565_100--Hb_000077_100 Hb_030565_100--Hb_029223_040 Hb_000236_180 Hb_000236_180 Hb_030565_100--Hb_000236_180 Hb_174541_030 Hb_174541_030 Hb_030565_100--Hb_174541_030 Hb_003470_110 Hb_003470_110 Hb_030565_100--Hb_003470_110 Hb_000297_140 Hb_000297_140 Hb_030565_100--Hb_000297_140 Hb_000959_130 Hb_000959_130 Hb_001404_070--Hb_000959_130 Hb_002750_040 Hb_002750_040 Hb_001404_070--Hb_002750_040 Hb_005545_110 Hb_005545_110 Hb_001404_070--Hb_005545_110 Hb_009456_010 Hb_009456_010 Hb_001404_070--Hb_009456_010 Hb_141194_020 Hb_141194_020 Hb_001404_070--Hb_141194_020 Hb_004667_030 Hb_004667_030 Hb_001404_070--Hb_004667_030 Hb_004117_020 Hb_004117_020 Hb_002203_020--Hb_004117_020 Hb_005000_280 Hb_005000_280 Hb_002203_020--Hb_005000_280 Hb_002809_080 Hb_002809_080 Hb_002203_020--Hb_002809_080 Hb_000076_280 Hb_000076_280 Hb_002203_020--Hb_000076_280 Hb_001769_070 Hb_001769_070 Hb_002203_020--Hb_001769_070 Hb_027400_020 Hb_027400_020 Hb_002203_020--Hb_027400_020 Hb_029223_040--Hb_000236_180 Hb_029223_040--Hb_000077_100 Hb_134014_010 Hb_134014_010 Hb_029223_040--Hb_134014_010 Hb_029223_040--Hb_003470_110 Hb_000806_130 Hb_000806_130 Hb_029223_040--Hb_000806_130 Hb_000077_100--Hb_000236_180 Hb_000820_110 Hb_000820_110 Hb_000077_100--Hb_000820_110 Hb_000193_210 Hb_000193_210 Hb_000077_100--Hb_000193_210 Hb_000580_110 Hb_000580_110 Hb_000077_100--Hb_000580_110 Hb_002374_510 Hb_002374_510 Hb_009122_010--Hb_002374_510 Hb_001269_580 Hb_001269_580 Hb_009122_010--Hb_001269_580 Hb_001410_080 Hb_001410_080 Hb_009122_010--Hb_001410_080 Hb_008304_050 Hb_008304_050 Hb_009122_010--Hb_008304_050 Hb_009122_010--Hb_002750_040 Hb_113766_010 Hb_113766_010 Hb_009122_010--Hb_113766_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0392211 0.102948 0.456113 2.22996 0.0171692 0.0102082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.052999 0.0834141 0 0.491893 0.779792

CAGE analysis