Hb_000463_130

Information

Type -
Description -
Location Contig463: 124728-125768
Sequence    

Annotation

kegg
ID rcu:RCOM_0440490
description light-inducible protein atls1, putative
nr
ID CDP15783.1
description unnamed protein product [Coffea canephora]
swissprot
ID P81748
description Macrophage migration inhibitory factor homolog OS=Trichuris trichiura PE=1 SV=2
trembl
ID A0A068V7C4
description Coffea canephora DH200=94 genomic scaffold, scaffold_108 OS=Coffea canephora GN=GSCOC_T00015871001 PE=4 SV=1
Gene Ontology
ID GO:0050178
description macrophage migration inhibitory factor homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43842: 107455-125889 , PASA_asmbl_43843: 107691-125862
cDNA
(Sanger)
(ID:Location)		 045_B18.ab1: 107477-125889

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000463_130 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000215_330 0.1047341315 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
3 Hb_016734_070 0.1132857706 - - hypothetical_protein [Oryza brachyantha]
4 Hb_002314_010 0.1237136729 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
5 Hb_000130_100 0.1296193715 - - hypothetical protein CICLE_v10022662mg [Citrus clementina]
6 Hb_000975_230 0.1307636604 - - hypothetical protein ZEAMMB73_864543 [Zea mays]
7 Hb_003376_190 0.131012901 - - syntaxin, putative [Ricinus communis]
8 Hb_000975_180 0.1313342781 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
9 Hb_000030_200 0.1328131036 - - PREDICTED: early nodulin-93-like [Populus euphratica]
10 Hb_000948_220 0.1332409784 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
11 Hb_002324_010 0.135854299 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
12 Hb_000107_300 0.1359502993 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
13 Hb_005045_070 0.138082258 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
14 Hb_000723_250 0.1387046924 - - hypothetical protein JCGZ_16520 [Jatropha curcas]
15 Hb_005306_070 0.1399770579 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
16 Hb_001635_130 0.1417515238 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
17 Hb_000087_130 0.1419750463 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
18 Hb_000042_200 0.1425295854 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
19 Hb_006915_040 0.1460459387 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
20 Hb_000768_130 0.1464241922 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]

Gene co-expression network

sample Hb_000463_130 Hb_000463_130 Hb_000215_330 Hb_000215_330 Hb_000463_130--Hb_000215_330 Hb_016734_070 Hb_016734_070 Hb_000463_130--Hb_016734_070 Hb_002314_010 Hb_002314_010 Hb_000463_130--Hb_002314_010 Hb_000130_100 Hb_000130_100 Hb_000463_130--Hb_000130_100 Hb_000975_230 Hb_000975_230 Hb_000463_130--Hb_000975_230 Hb_003376_190 Hb_003376_190 Hb_000463_130--Hb_003376_190 Hb_005306_070 Hb_005306_070 Hb_000215_330--Hb_005306_070 Hb_000107_300 Hb_000107_300 Hb_000215_330--Hb_000107_300 Hb_000215_330--Hb_002314_010 Hb_000215_330--Hb_003376_190 Hb_003494_050 Hb_003494_050 Hb_000215_330--Hb_003494_050 Hb_002303_060 Hb_002303_060 Hb_000215_330--Hb_002303_060 Hb_005235_030 Hb_005235_030 Hb_016734_070--Hb_005235_030 Hb_002000_140 Hb_002000_140 Hb_016734_070--Hb_002000_140 Hb_000808_190 Hb_000808_190 Hb_016734_070--Hb_000808_190 Hb_001242_140 Hb_001242_140 Hb_016734_070--Hb_001242_140 Hb_016734_070--Hb_000215_330 Hb_002314_010--Hb_000107_300 Hb_002314_010--Hb_002303_060 Hb_002314_010--Hb_005306_070 Hb_001053_140 Hb_001053_140 Hb_002314_010--Hb_001053_140 Hb_003605_160 Hb_003605_160 Hb_002314_010--Hb_003605_160 Hb_003018_050 Hb_003018_050 Hb_000130_100--Hb_003018_050 Hb_000975_180 Hb_000975_180 Hb_000130_100--Hb_000975_180 Hb_006452_040 Hb_006452_040 Hb_000130_100--Hb_006452_040 Hb_002324_010 Hb_002324_010 Hb_000130_100--Hb_002324_010 Hb_000130_100--Hb_000107_300 Hb_005045_070 Hb_005045_070 Hb_000130_100--Hb_005045_070 Hb_000445_490 Hb_000445_490 Hb_000975_230--Hb_000445_490 Hb_003777_040 Hb_003777_040 Hb_000975_230--Hb_003777_040 Hb_000049_050 Hb_000049_050 Hb_000975_230--Hb_000049_050 Hb_000030_200 Hb_000030_200 Hb_000975_230--Hb_000030_200 Hb_000260_790 Hb_000260_790 Hb_000975_230--Hb_000260_790 Hb_000834_030 Hb_000834_030 Hb_000975_230--Hb_000834_030 Hb_003376_190--Hb_000107_300 Hb_003376_190--Hb_002324_010 Hb_003376_190--Hb_005235_030 Hb_005269_080 Hb_005269_080 Hb_003376_190--Hb_005269_080 Hb_006915_040 Hb_006915_040 Hb_003376_190--Hb_006915_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6623 5.30245 38.603 116.692 17.6294 45.0301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
113.808 206.975 44.6723 25.8803 46.068

CAGE analysis