Hb_000465_040

Information

Type -
Description -
Location Contig465: 19894-22534
Sequence    

Annotation

kegg
ID mdm:103433005
description uncharacterized LOC103433005
nr
ID XP_008369446.1
description PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
swissprot
ID -
description -
trembl
ID A0A061G4H5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_015942 PE=4 SV=1
Gene Ontology
ID GO:0016021
description PREDICTED: uncharacterized protein LOC103433005 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43940: 20303-21688 , PASA_asmbl_43941: 20430-20541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_040 0.0 - - PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
2 Hb_000457_110 0.0806692486 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
3 Hb_000723_090 0.0836013264 - - conserved hypothetical protein [Ricinus communis]
4 Hb_116420_030 0.0843094281 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
5 Hb_002105_090 0.0930630871 - - Rab4 [Hevea brasiliensis]
6 Hb_000714_030 0.0944936996 - - Nucleosome assembly [Gossypium arboreum]
7 Hb_000084_290 0.0980451248 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
8 Hb_003878_010 0.103462094 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
9 Hb_001817_090 0.1044571259 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
10 Hb_019249_010 0.1057353336 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
11 Hb_002107_130 0.1073851955 - - protein with unknown function [Ricinus communis]
12 Hb_004440_050 0.1085992008 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
13 Hb_078185_010 0.1124011069 - - -
14 Hb_001279_070 0.1124963879 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
15 Hb_003551_020 0.112788067 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
16 Hb_003874_020 0.1132172531 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
17 Hb_001421_020 0.1138736813 - - hypothetical protein F383_00667 [Gossypium arboreum]
18 Hb_011537_010 0.1139351648 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
19 Hb_000154_080 0.1142044038 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
20 Hb_128048_010 0.1149823921 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]

Gene co-expression network

sample Hb_000465_040 Hb_000465_040 Hb_000457_110 Hb_000457_110 Hb_000465_040--Hb_000457_110 Hb_000723_090 Hb_000723_090 Hb_000465_040--Hb_000723_090 Hb_116420_030 Hb_116420_030 Hb_000465_040--Hb_116420_030 Hb_002105_090 Hb_002105_090 Hb_000465_040--Hb_002105_090 Hb_000714_030 Hb_000714_030 Hb_000465_040--Hb_000714_030 Hb_000084_290 Hb_000084_290 Hb_000465_040--Hb_000084_290 Hb_004944_010 Hb_004944_010 Hb_000457_110--Hb_004944_010 Hb_000465_430 Hb_000465_430 Hb_000457_110--Hb_000465_430 Hb_001936_080 Hb_001936_080 Hb_000457_110--Hb_001936_080 Hb_000349_060 Hb_000349_060 Hb_000457_110--Hb_000349_060 Hb_012092_010 Hb_012092_010 Hb_000457_110--Hb_012092_010 Hb_000723_090--Hb_002105_090 Hb_000500_130 Hb_000500_130 Hb_000723_090--Hb_000500_130 Hb_000316_110 Hb_000316_110 Hb_000723_090--Hb_000316_110 Hb_159558_030 Hb_159558_030 Hb_000723_090--Hb_159558_030 Hb_002400_220 Hb_002400_220 Hb_000723_090--Hb_002400_220 Hb_001279_070 Hb_001279_070 Hb_116420_030--Hb_001279_070 Hb_116420_030--Hb_000723_090 Hb_000484_020 Hb_000484_020 Hb_116420_030--Hb_000484_020 Hb_007432_080 Hb_007432_080 Hb_116420_030--Hb_007432_080 Hb_070986_010 Hb_070986_010 Hb_116420_030--Hb_070986_010 Hb_000494_020 Hb_000494_020 Hb_002105_090--Hb_000494_020 Hb_004324_310 Hb_004324_310 Hb_002105_090--Hb_004324_310 Hb_032717_080 Hb_032717_080 Hb_002105_090--Hb_032717_080 Hb_002105_090--Hb_070986_010 Hb_001184_090 Hb_001184_090 Hb_002105_090--Hb_001184_090 Hb_010407_040 Hb_010407_040 Hb_002105_090--Hb_010407_040 Hb_000742_140 Hb_000742_140 Hb_000714_030--Hb_000742_140 Hb_000714_030--Hb_000457_110 Hb_009767_120 Hb_009767_120 Hb_000714_030--Hb_009767_120 Hb_000933_180 Hb_000933_180 Hb_000714_030--Hb_000933_180 Hb_000098_190 Hb_000098_190 Hb_000714_030--Hb_000098_190 Hb_000084_290--Hb_000742_140 Hb_025236_040 Hb_025236_040 Hb_000084_290--Hb_025236_040 Hb_000084_290--Hb_009767_120 Hb_011828_050 Hb_011828_050 Hb_000084_290--Hb_011828_050 Hb_000084_290--Hb_000349_060 Hb_002983_010 Hb_002983_010 Hb_000084_290--Hb_002983_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.0863 19.1278 26.3093 44.9408 75.8279 72.2895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.1797 94.8944 27.1535 15.7634 9.30799

CAGE analysis