Hb_000465_060

Information

Type -
Description -
Location Contig465: 37193-39548
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11140g
description 60S ribosomal protein L15
nr
ID XP_012070019.1
description PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
swissprot
ID O82528
description 60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1
trembl
ID A0A067KUK5
description Ribosomal protein L15 OS=Jatropha curcas GN=JCGZ_03422 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43944: 37259-39467
cDNA
(Sanger)
(ID:Location)		 007_E03.ab1: 37391-39457 , 019_N22.ab1: 37955-39457 , 042_G13.ab1: 37672-39457

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_060 0.0 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
2 Hb_001584_070 0.0569307032 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012515_010 0.0581787328 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
4 Hb_023732_070 0.0588808076 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
5 Hb_001824_070 0.0623687491 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
6 Hb_143629_230 0.0631728429 - - ring finger, putative [Ricinus communis]
7 Hb_002893_060 0.0644621982 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
8 Hb_005997_010 0.0650829694 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
9 Hb_000545_150 0.0652912833 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
10 Hb_000317_340 0.0664557588 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000580_080 0.0665433386 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
12 Hb_001383_060 0.0668610637 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
13 Hb_000371_080 0.0676820166 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
14 Hb_002685_190 0.068825817 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
15 Hb_004595_020 0.0701289824 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
16 Hb_000928_240 0.0743110927 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
17 Hb_001818_020 0.0749147279 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
18 Hb_000444_050 0.0773298931 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
19 Hb_000970_010 0.0779978696 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
20 Hb_004204_120 0.0783304432 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_000465_060 Hb_000465_060 Hb_001584_070 Hb_001584_070 Hb_000465_060--Hb_001584_070 Hb_012515_010 Hb_012515_010 Hb_000465_060--Hb_012515_010 Hb_023732_070 Hb_023732_070 Hb_000465_060--Hb_023732_070 Hb_001824_070 Hb_001824_070 Hb_000465_060--Hb_001824_070 Hb_143629_230 Hb_143629_230 Hb_000465_060--Hb_143629_230 Hb_002893_060 Hb_002893_060 Hb_000465_060--Hb_002893_060 Hb_000365_380 Hb_000365_380 Hb_001584_070--Hb_000365_380 Hb_001584_070--Hb_001824_070 Hb_001584_070--Hb_012515_010 Hb_000417_110 Hb_000417_110 Hb_001584_070--Hb_000417_110 Hb_001383_060 Hb_001383_060 Hb_001584_070--Hb_001383_060 Hb_025193_050 Hb_025193_050 Hb_012515_010--Hb_025193_050 Hb_004595_020 Hb_004595_020 Hb_012515_010--Hb_004595_020 Hb_011139_020 Hb_011139_020 Hb_012515_010--Hb_011139_020 Hb_024650_050 Hb_024650_050 Hb_012515_010--Hb_024650_050 Hb_000970_010 Hb_000970_010 Hb_023732_070--Hb_000970_010 Hb_023732_070--Hb_001824_070 Hb_000444_050 Hb_000444_050 Hb_023732_070--Hb_000444_050 Hb_000371_080 Hb_000371_080 Hb_023732_070--Hb_000371_080 Hb_023732_070--Hb_001584_070 Hb_001477_110 Hb_001477_110 Hb_001824_070--Hb_001477_110 Hb_009711_030 Hb_009711_030 Hb_001824_070--Hb_009711_030 Hb_003878_190 Hb_003878_190 Hb_001824_070--Hb_003878_190 Hb_001824_070--Hb_000371_080 Hb_000317_340 Hb_000317_340 Hb_143629_230--Hb_000317_340 Hb_000545_150 Hb_000545_150 Hb_143629_230--Hb_000545_150 Hb_143629_230--Hb_000365_380 Hb_011781_030 Hb_011781_030 Hb_143629_230--Hb_011781_030 Hb_143629_230--Hb_004595_020 Hb_003001_060 Hb_003001_060 Hb_002893_060--Hb_003001_060 Hb_000025_530 Hb_000025_530 Hb_002893_060--Hb_000025_530 Hb_002893_060--Hb_023732_070 Hb_002893_060--Hb_003878_190 Hb_002893_060--Hb_001824_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
157.143 42.7539 61.8191 48.6858 129.818 207.772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
253.67 323.802 140.991 87.9851 46.5077

CAGE analysis