Hb_000465_070

Information

Type -
Description -
Location Contig465: 39877-40647
Sequence    

Annotation

kegg
ID tcc:TCM_007626
description Aconitase/3-isopropylmalate dehydratase protein
nr
ID XP_012070020.1
description PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
swissprot
ID Q9ZW85
description 3-isopropylmalate dehydratase small subunit 3 OS=Arabidopsis thaliana GN=At2g43090 PE=1 SV=1
trembl
ID A0A067KUS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03423 PE=4 SV=1
Gene Ontology
ID GO:0016836
description 3-isopropylmalate dehydratase small subunit 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43945: 39871-42401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_070 0.0 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
2 Hb_000035_480 0.0657250872 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
3 Hb_000457_290 0.0716817347 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
4 Hb_000403_070 0.0835251614 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_002232_060 0.091773072 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
6 Hb_100886_010 0.0936988572 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_003106_100 0.096387538 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
8 Hb_000072_200 0.0989755798 - - PREDICTED: myb-like protein X [Jatropha curcas]
9 Hb_000649_140 0.0991732709 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
10 Hb_001976_040 0.0994852506 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
11 Hb_140627_010 0.0995474042 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002239_050 0.0999227016 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
13 Hb_002631_180 0.104021976 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
14 Hb_015183_060 0.1065881209 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
15 Hb_001979_020 0.1074646656 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
16 Hb_000615_050 0.1107761657 - - Potassium transporter 11 family protein [Populus trichocarpa]
17 Hb_003880_030 0.1116960235 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
18 Hb_005843_140 0.1127626913 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
19 Hb_001892_070 0.1145677926 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
20 Hb_000212_290 0.115255317 - - PREDICTED: protein TIC 20-II, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000465_070 Hb_000465_070 Hb_000035_480 Hb_000035_480 Hb_000465_070--Hb_000035_480 Hb_000457_290 Hb_000457_290 Hb_000465_070--Hb_000457_290 Hb_000403_070 Hb_000403_070 Hb_000465_070--Hb_000403_070 Hb_002232_060 Hb_002232_060 Hb_000465_070--Hb_002232_060 Hb_100886_010 Hb_100886_010 Hb_000465_070--Hb_100886_010 Hb_003106_100 Hb_003106_100 Hb_000465_070--Hb_003106_100 Hb_140627_010 Hb_140627_010 Hb_000035_480--Hb_140627_010 Hb_000035_480--Hb_000457_290 Hb_000035_480--Hb_000403_070 Hb_001892_070 Hb_001892_070 Hb_000035_480--Hb_001892_070 Hb_000392_550 Hb_000392_550 Hb_000035_480--Hb_000392_550 Hb_000457_290--Hb_140627_010 Hb_000457_290--Hb_000403_070 Hb_000457_290--Hb_001892_070 Hb_000457_290--Hb_002232_060 Hb_006846_150 Hb_006846_150 Hb_000403_070--Hb_006846_150 Hb_000403_070--Hb_140627_010 Hb_001575_060 Hb_001575_060 Hb_000403_070--Hb_001575_060 Hb_001240_010 Hb_001240_010 Hb_000403_070--Hb_001240_010 Hb_001979_020 Hb_001979_020 Hb_002232_060--Hb_001979_020 Hb_005843_140 Hb_005843_140 Hb_002232_060--Hb_005843_140 Hb_000072_200 Hb_000072_200 Hb_002232_060--Hb_000072_200 Hb_003020_150 Hb_003020_150 Hb_002232_060--Hb_003020_150 Hb_006198_070 Hb_006198_070 Hb_002232_060--Hb_006198_070 Hb_100886_010--Hb_000035_480 Hb_100886_010--Hb_140627_010 Hb_100886_010--Hb_000072_200 Hb_003020_260 Hb_003020_260 Hb_100886_010--Hb_003020_260 Hb_100886_010--Hb_000457_290 Hb_002876_020 Hb_002876_020 Hb_003106_100--Hb_002876_020 Hb_000649_140 Hb_000649_140 Hb_003106_100--Hb_000649_140 Hb_001019_150 Hb_001019_150 Hb_003106_100--Hb_001019_150 Hb_000428_060 Hb_000428_060 Hb_003106_100--Hb_000428_060 Hb_001353_010 Hb_001353_010 Hb_003106_100--Hb_001353_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2426 35.8736 42.8009 52.5243 16.9203 22.6218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.6203 118.621 55.5662 60.0505 89.0667

CAGE analysis