Hb_000465_090

Information

Type -
Description -
Location Contig465: 51788-56472
Sequence    

Annotation

kegg
ID cic:CICLE_v10021569mg
description hypothetical protein
nr
ID XP_012070022.1
description PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L712
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03425 PE=4 SV=1
Gene Ontology
ID GO:0016853
description tryptophan rna-binding attenuator

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43951: 51726-56401 , PASA_asmbl_43952: 51804-56368 , PASA_asmbl_43953: 52722-52957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_090 0.0 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
2 Hb_001012_010 0.058292447 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
3 Hb_009694_010 0.0651004854 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005697_060 0.0676887324 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
5 Hb_002477_300 0.0683649219 - - transcription factor, putative [Ricinus communis]
6 Hb_007163_070 0.0702460083 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
7 Hb_146673_010 0.0708788829 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
8 Hb_002168_060 0.0728113543 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
9 Hb_004116_060 0.0771958632 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
10 Hb_005588_030 0.0772051168 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
11 Hb_005054_060 0.0775411879 - - PREDICTED: syntaxin-81 [Jatropha curcas]
12 Hb_010222_020 0.0802373114 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
13 Hb_004096_090 0.0804603895 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
14 Hb_032264_070 0.0812624247 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
15 Hb_004449_170 0.0819241458 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
16 Hb_001195_480 0.08299354 - - cop9 complex subunit, putative [Ricinus communis]
17 Hb_002235_250 0.0841438154 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
18 Hb_000137_040 0.0849827485 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
19 Hb_003057_090 0.0850745096 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
20 Hb_012395_230 0.0851179587 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000465_090 Hb_000465_090 Hb_001012_010 Hb_001012_010 Hb_000465_090--Hb_001012_010 Hb_009694_010 Hb_009694_010 Hb_000465_090--Hb_009694_010 Hb_005697_060 Hb_005697_060 Hb_000465_090--Hb_005697_060 Hb_002477_300 Hb_002477_300 Hb_000465_090--Hb_002477_300 Hb_007163_070 Hb_007163_070 Hb_000465_090--Hb_007163_070 Hb_146673_010 Hb_146673_010 Hb_000465_090--Hb_146673_010 Hb_005588_030 Hb_005588_030 Hb_001012_010--Hb_005588_030 Hb_002530_030 Hb_002530_030 Hb_001012_010--Hb_002530_030 Hb_009421_020 Hb_009421_020 Hb_001012_010--Hb_009421_020 Hb_009545_080 Hb_009545_080 Hb_001012_010--Hb_009545_080 Hb_000768_090 Hb_000768_090 Hb_001012_010--Hb_000768_090 Hb_028227_020 Hb_028227_020 Hb_009694_010--Hb_028227_020 Hb_004096_090 Hb_004096_090 Hb_009694_010--Hb_004096_090 Hb_001157_020 Hb_001157_020 Hb_009694_010--Hb_001157_020 Hb_007632_030 Hb_007632_030 Hb_009694_010--Hb_007632_030 Hb_009694_010--Hb_005697_060 Hb_005697_060--Hb_007163_070 Hb_006120_070 Hb_006120_070 Hb_005697_060--Hb_006120_070 Hb_005697_060--Hb_028227_020 Hb_001662_150 Hb_001662_150 Hb_005697_060--Hb_001662_150 Hb_001534_120 Hb_001534_120 Hb_005697_060--Hb_001534_120 Hb_004449_170 Hb_004449_170 Hb_002477_300--Hb_004449_170 Hb_002477_300--Hb_146673_010 Hb_000731_160 Hb_000731_160 Hb_002477_300--Hb_000731_160 Hb_001329_290 Hb_001329_290 Hb_002477_300--Hb_001329_290 Hb_002477_300--Hb_001012_010 Hb_007163_070--Hb_001662_150 Hb_007163_070--Hb_028227_020 Hb_003942_020 Hb_003942_020 Hb_007163_070--Hb_003942_020 Hb_002534_150 Hb_002534_150 Hb_007163_070--Hb_002534_150 Hb_000633_020 Hb_000633_020 Hb_146673_010--Hb_000633_020 Hb_002946_190 Hb_002946_190 Hb_146673_010--Hb_002946_190 Hb_003077_020 Hb_003077_020 Hb_146673_010--Hb_003077_020 Hb_146673_010--Hb_000731_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8407 11.9 37.2273 20.4835 28.6987 29.1645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.3983 43.188 23.4159 17.5389 25.0151

CAGE analysis