Hb_000465_130

Information

Type transcription factor
Description TF Family: ERF
Location Contig465: 94905-96061
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15550g
description hypothetical protein
nr
ID XP_006368997.1
description hypothetical protein POPTR_0001s15550g [Populus trichocarpa]
swissprot
ID Q8LBQ7
description Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2
trembl
ID U5GT39
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s15550g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_130 0.0 transcription factor TF Family: ERF hypothetical protein POPTR_0001s15550g [Populus trichocarpa]
2 Hb_004846_080 0.1167033236 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
3 Hb_001832_140 0.1190512365 - - endomembrane protein 70 family protein [Medicago truncatula]
4 Hb_008143_060 0.1204044648 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
5 Hb_001195_740 0.1368772227 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
6 Hb_001776_070 0.13805066 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
7 Hb_001252_050 0.1416425713 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
8 Hb_000696_250 0.1451002383 - - PREDICTED: patellin-6 [Jatropha curcas]
9 Hb_027556_060 0.1570044998 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
10 Hb_006711_040 0.1590271987 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
11 Hb_005993_030 0.1598262048 - - putative senescence-associated protein SAG102 [Populus trichocarpa]
12 Hb_000749_120 0.1622688208 - - PREDICTED: uncharacterized protein LOC105644255 isoform X2 [Jatropha curcas]
13 Hb_000417_140 0.1644173445 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
14 Hb_000696_030 0.1648824746 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
15 Hb_009767_030 0.1677926685 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
16 Hb_001349_020 0.167833782 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
17 Hb_000078_160 0.1690697983 - - PREDICTED: protein LURP-one-related 12-like [Jatropha curcas]
18 Hb_001157_190 0.1701012982 - - PREDICTED: protein YLS3 [Jatropha curcas]
19 Hb_000567_060 0.1706040986 - - PREDICTED: U-box domain-containing protein 7 [Jatropha curcas]
20 Hb_005839_030 0.1754883266 - - PREDICTED: potassium transporter 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000465_130 Hb_000465_130 Hb_004846_080 Hb_004846_080 Hb_000465_130--Hb_004846_080 Hb_001832_140 Hb_001832_140 Hb_000465_130--Hb_001832_140 Hb_008143_060 Hb_008143_060 Hb_000465_130--Hb_008143_060 Hb_001195_740 Hb_001195_740 Hb_000465_130--Hb_001195_740 Hb_001776_070 Hb_001776_070 Hb_000465_130--Hb_001776_070 Hb_001252_050 Hb_001252_050 Hb_000465_130--Hb_001252_050 Hb_006711_040 Hb_006711_040 Hb_004846_080--Hb_006711_040 Hb_004846_080--Hb_008143_060 Hb_004846_080--Hb_001832_140 Hb_005839_030 Hb_005839_030 Hb_004846_080--Hb_005839_030 Hb_001782_100 Hb_001782_100 Hb_004846_080--Hb_001782_100 Hb_000696_250 Hb_000696_250 Hb_001832_140--Hb_000696_250 Hb_001832_140--Hb_001195_740 Hb_001832_140--Hb_008143_060 Hb_001832_140--Hb_006711_040 Hb_001832_140--Hb_001252_050 Hb_008143_060--Hb_001195_740 Hb_008143_060--Hb_006711_040 Hb_008143_060--Hb_001252_050 Hb_008143_060--Hb_000696_250 Hb_001157_190 Hb_001157_190 Hb_001195_740--Hb_001157_190 Hb_002918_120 Hb_002918_120 Hb_001195_740--Hb_002918_120 Hb_001195_740--Hb_000696_250 Hb_000696_030 Hb_000696_030 Hb_001195_740--Hb_000696_030 Hb_010164_020 Hb_010164_020 Hb_001776_070--Hb_010164_020 Hb_001776_070--Hb_000696_030 Hb_027556_060 Hb_027556_060 Hb_001776_070--Hb_027556_060 Hb_005679_110 Hb_005679_110 Hb_001776_070--Hb_005679_110 Hb_001349_020 Hb_001349_020 Hb_001776_070--Hb_001349_020 Hb_005144_080 Hb_005144_080 Hb_001776_070--Hb_005144_080 Hb_000343_220 Hb_000343_220 Hb_001252_050--Hb_000343_220 Hb_008143_050 Hb_008143_050 Hb_001252_050--Hb_008143_050 Hb_001252_050--Hb_000696_250 Hb_001252_050--Hb_006711_040 Hb_000417_140 Hb_000417_140 Hb_001252_050--Hb_000417_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.237885 1.21183 1.01639 0 0.12112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.967827 0.231867

CAGE analysis