Hb_000465_150

Information

Type -
Description -
Location Contig465: 106297-112693
Sequence    

Annotation

kegg
ID rcu:RCOM_1119640
description acyl-CoA oxidase, putative (EC:1.9.3.1)
nr
ID XP_012070029.1
description PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
swissprot
ID O65202
description Peroxisomal acyl-coenzyme A oxidase 1 OS=Arabidopsis thaliana GN=ACX1 PE=1 SV=1
trembl
ID A0A067L5X5
description Acyl-coenzyme A oxidase OS=Jatropha curcas GN=JCGZ_03431 PE=3 SV=1
Gene Ontology
ID GO:0005777
description peroxisomal acyl-coenzyme a oxidase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43969: 106252-112660 , PASA_asmbl_43970: 111922-112660 , PASA_asmbl_43971: 113442-114718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_150 0.0 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
2 Hb_007416_110 0.0791881039 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
3 Hb_005015_110 0.0799699184 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
4 Hb_002486_080 0.0918299879 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
5 Hb_003025_030 0.0976554062 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_002232_430 0.1001138516 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
7 Hb_001493_150 0.1027972635 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
8 Hb_010872_050 0.1054107307 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
9 Hb_005686_130 0.1064716428 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
10 Hb_000535_050 0.1105524633 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
11 Hb_009615_060 0.1148618863 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
12 Hb_000666_010 0.1155940774 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000638_130 0.1185727515 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
14 Hb_000510_170 0.1187822438 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
15 Hb_005946_150 0.1189086236 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
16 Hb_000197_190 0.1194064137 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
17 Hb_002281_020 0.1195205869 - - PREDICTED: actin-related protein 8 [Jatropha curcas]
18 Hb_007416_070 0.1196211213 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
19 Hb_000683_050 0.1199497239 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
20 Hb_001728_140 0.120091898 - - -

Gene co-expression network

sample Hb_000465_150 Hb_000465_150 Hb_007416_110 Hb_007416_110 Hb_000465_150--Hb_007416_110 Hb_005015_110 Hb_005015_110 Hb_000465_150--Hb_005015_110 Hb_002486_080 Hb_002486_080 Hb_000465_150--Hb_002486_080 Hb_003025_030 Hb_003025_030 Hb_000465_150--Hb_003025_030 Hb_002232_430 Hb_002232_430 Hb_000465_150--Hb_002232_430 Hb_001493_150 Hb_001493_150 Hb_000465_150--Hb_001493_150 Hb_002281_020 Hb_002281_020 Hb_007416_110--Hb_002281_020 Hb_000510_170 Hb_000510_170 Hb_007416_110--Hb_000510_170 Hb_003440_020 Hb_003440_020 Hb_007416_110--Hb_003440_020 Hb_007416_110--Hb_002486_080 Hb_000638_130 Hb_000638_130 Hb_007416_110--Hb_000638_130 Hb_180378_010 Hb_180378_010 Hb_005015_110--Hb_180378_010 Hb_001571_060 Hb_001571_060 Hb_005015_110--Hb_001571_060 Hb_005015_110--Hb_002486_080 Hb_000139_340 Hb_000139_340 Hb_005015_110--Hb_000139_340 Hb_005015_110--Hb_007416_110 Hb_001301_280 Hb_001301_280 Hb_002486_080--Hb_001301_280 Hb_001951_060 Hb_001951_060 Hb_002486_080--Hb_001951_060 Hb_007416_070 Hb_007416_070 Hb_002486_080--Hb_007416_070 Hb_002486_080--Hb_002281_020 Hb_002486_080--Hb_001571_060 Hb_000804_020 Hb_000804_020 Hb_003025_030--Hb_000804_020 Hb_124315_010 Hb_124315_010 Hb_003025_030--Hb_124315_010 Hb_003025_030--Hb_002281_020 Hb_001564_070 Hb_001564_070 Hb_003025_030--Hb_001564_070 Hb_003025_030--Hb_007416_110 Hb_006637_030 Hb_006637_030 Hb_002232_430--Hb_006637_030 Hb_001147_050 Hb_001147_050 Hb_002232_430--Hb_001147_050 Hb_000684_040 Hb_000684_040 Hb_002232_430--Hb_000684_040 Hb_005686_130 Hb_005686_130 Hb_002232_430--Hb_005686_130 Hb_002232_430--Hb_000638_130 Hb_009615_060 Hb_009615_060 Hb_001493_150--Hb_009615_060 Hb_002301_100 Hb_002301_100 Hb_001493_150--Hb_002301_100 Hb_012393_030 Hb_012393_030 Hb_001493_150--Hb_012393_030 Hb_001221_020 Hb_001221_020 Hb_001493_150--Hb_001221_020 Hb_005648_010 Hb_005648_010 Hb_001493_150--Hb_005648_010 Hb_021576_010 Hb_021576_010 Hb_001493_150--Hb_021576_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.2306 16.5776 33.5664 27.6702 5.70099 5.40623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9225 13.1492 16.069 42.02 28.6049

CAGE analysis