Hb_000465_160

Information

Type -
Description -
Location Contig465: 113487-116319
Sequence    

Annotation

kegg
ID rcu:RCOM_0975840
description hypothetical protein
nr
ID XP_012070030.1
description PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03432 PE=4 SV=1
Gene Ontology
ID GO:0005794
description o-fucosyltransferase family isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43971: 113442-114718 , PASA_asmbl_43972: 115684-115981 , PASA_asmbl_43973: 116548-121131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_160 0.0 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
2 Hb_001799_210 0.0336639994 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
3 Hb_001300_150 0.0538381747 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
4 Hb_001009_270 0.0615461771 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
5 Hb_000260_030 0.0682243514 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
6 Hb_003177_030 0.0704376789 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
7 Hb_004109_170 0.072768106 - - PREDICTED: probable ribokinase [Jatropha curcas]
8 Hb_002754_010 0.0731081694 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
9 Hb_050514_010 0.0739158152 - - hypothetical protein 29 [Hevea brasiliensis]
10 Hb_011344_210 0.0741273563 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
11 Hb_000300_500 0.0743111817 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
12 Hb_000580_180 0.0745045386 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000331_550 0.0747854115 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
14 Hb_000003_250 0.0750978881 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
15 Hb_024439_010 0.0751813003 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
16 Hb_001159_130 0.0755733097 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
17 Hb_004162_130 0.0756978923 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001511_060 0.0760585822 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
19 Hb_002830_030 0.0760610244 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
20 Hb_000340_180 0.0780108175 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000465_160 Hb_000465_160 Hb_001799_210 Hb_001799_210 Hb_000465_160--Hb_001799_210 Hb_001300_150 Hb_001300_150 Hb_000465_160--Hb_001300_150 Hb_001009_270 Hb_001009_270 Hb_000465_160--Hb_001009_270 Hb_000260_030 Hb_000260_030 Hb_000465_160--Hb_000260_030 Hb_003177_030 Hb_003177_030 Hb_000465_160--Hb_003177_030 Hb_004109_170 Hb_004109_170 Hb_000465_160--Hb_004109_170 Hb_001799_210--Hb_001009_270 Hb_000003_250 Hb_000003_250 Hb_001799_210--Hb_000003_250 Hb_001799_210--Hb_003177_030 Hb_032208_090 Hb_032208_090 Hb_001799_210--Hb_032208_090 Hb_011344_210 Hb_011344_210 Hb_001799_210--Hb_011344_210 Hb_000375_350 Hb_000375_350 Hb_001300_150--Hb_000375_350 Hb_000599_250 Hb_000599_250 Hb_001300_150--Hb_000599_250 Hb_003582_060 Hb_003582_060 Hb_001300_150--Hb_003582_060 Hb_027380_130 Hb_027380_130 Hb_001300_150--Hb_027380_130 Hb_001300_150--Hb_000260_030 Hb_004907_080 Hb_004907_080 Hb_001009_270--Hb_004907_080 Hb_001009_270--Hb_032208_090 Hb_001009_270--Hb_003177_030 Hb_000777_040 Hb_000777_040 Hb_001009_270--Hb_000777_040 Hb_050514_010 Hb_050514_010 Hb_000260_030--Hb_050514_010 Hb_000260_030--Hb_004109_170 Hb_029879_130 Hb_029879_130 Hb_000260_030--Hb_029879_130 Hb_000827_050 Hb_000827_050 Hb_000260_030--Hb_000827_050 Hb_000614_160 Hb_000614_160 Hb_000260_030--Hb_000614_160 Hb_000749_220 Hb_000749_220 Hb_003177_030--Hb_000749_220 Hb_005144_160 Hb_005144_160 Hb_003177_030--Hb_005144_160 Hb_000676_250 Hb_000676_250 Hb_003177_030--Hb_000676_250 Hb_001159_130 Hb_001159_130 Hb_003177_030--Hb_001159_130 Hb_000019_030 Hb_000019_030 Hb_003177_030--Hb_000019_030 Hb_000205_090 Hb_000205_090 Hb_004109_170--Hb_000205_090 Hb_000580_090 Hb_000580_090 Hb_004109_170--Hb_000580_090 Hb_118419_010 Hb_118419_010 Hb_004109_170--Hb_118419_010 Hb_012286_030 Hb_012286_030 Hb_004109_170--Hb_012286_030 Hb_006615_240 Hb_006615_240 Hb_004109_170--Hb_006615_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.80546 6.56437 9.5899 10.1282 8.93675 8.56025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.63802 12.0032 15.4418 7.0184 6.14724

CAGE analysis