Hb_000465_230

Information

Type -
Description -
Location Contig465: 173899-177432
Sequence    

Annotation

kegg
ID rcu:RCOM_0005540
description hypothetical protein
nr
ID XP_012070040.1
description PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KY48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03439 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43981: 174043-174122 , PASA_asmbl_43982: 174124-175841 , PASA_asmbl_43983: 175910-176036
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_230 0.0 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
2 Hb_013399_050 0.0968283097 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
3 Hb_002217_020 0.1078623462 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
4 Hb_061195_020 0.1120427942 - - PREDICTED: uncharacterized protein LOC101990594 [Microtus ochrogaster]
5 Hb_065525_090 0.1126622172 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
6 Hb_001825_060 0.1138293221 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
7 Hb_012107_060 0.1183521915 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
8 Hb_002660_070 0.1210704022 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
9 Hb_000069_420 0.1214988324 - - Beclin-1, putative [Ricinus communis]
10 Hb_000327_060 0.123778871 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
11 Hb_158445_010 0.1240530131 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
12 Hb_002835_180 0.1256407725 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_008566_050 0.1271476412 - - phosphoglycerate mutase, putative [Ricinus communis]
14 Hb_001545_160 0.1280528635 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC102615208 isoform X1 [Citrus sinensis]
15 Hb_000424_200 0.1283112226 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
16 Hb_003994_260 0.1284802745 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
17 Hb_005545_100 0.12945033 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
18 Hb_001856_200 0.1305938387 - - Esterase PIR7B, putative [Ricinus communis]
19 Hb_136509_010 0.1308703206 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
20 Hb_011021_040 0.1316107899 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]

Gene co-expression network

sample Hb_000465_230 Hb_000465_230 Hb_013399_050 Hb_013399_050 Hb_000465_230--Hb_013399_050 Hb_002217_020 Hb_002217_020 Hb_000465_230--Hb_002217_020 Hb_061195_020 Hb_061195_020 Hb_000465_230--Hb_061195_020 Hb_065525_090 Hb_065525_090 Hb_000465_230--Hb_065525_090 Hb_001825_060 Hb_001825_060 Hb_000465_230--Hb_001825_060 Hb_012107_060 Hb_012107_060 Hb_000465_230--Hb_012107_060 Hb_011021_040 Hb_011021_040 Hb_013399_050--Hb_011021_040 Hb_000424_200 Hb_000424_200 Hb_013399_050--Hb_000424_200 Hb_007037_020 Hb_007037_020 Hb_013399_050--Hb_007037_020 Hb_013405_140 Hb_013405_140 Hb_013399_050--Hb_013405_140 Hb_000327_060 Hb_000327_060 Hb_013399_050--Hb_000327_060 Hb_158445_010 Hb_158445_010 Hb_013399_050--Hb_158445_010 Hb_022250_060 Hb_022250_060 Hb_002217_020--Hb_022250_060 Hb_007317_010 Hb_007317_010 Hb_002217_020--Hb_007317_010 Hb_003657_010 Hb_003657_010 Hb_002217_020--Hb_003657_010 Hb_136509_010 Hb_136509_010 Hb_002217_020--Hb_136509_010 Hb_001856_200 Hb_001856_200 Hb_002217_020--Hb_001856_200 Hb_000164_020 Hb_000164_020 Hb_002217_020--Hb_000164_020 Hb_015807_100 Hb_015807_100 Hb_061195_020--Hb_015807_100 Hb_029904_030 Hb_029904_030 Hb_061195_020--Hb_029904_030 Hb_007850_080 Hb_007850_080 Hb_061195_020--Hb_007850_080 Hb_000525_020 Hb_000525_020 Hb_061195_020--Hb_000525_020 Hb_033642_080 Hb_033642_080 Hb_061195_020--Hb_033642_080 Hb_002660_070 Hb_002660_070 Hb_065525_090--Hb_002660_070 Hb_034406_030 Hb_034406_030 Hb_065525_090--Hb_034406_030 Hb_001545_160 Hb_001545_160 Hb_065525_090--Hb_001545_160 Hb_020805_130 Hb_020805_130 Hb_065525_090--Hb_020805_130 Hb_002835_180 Hb_002835_180 Hb_065525_090--Hb_002835_180 Hb_000120_960 Hb_000120_960 Hb_065525_090--Hb_000120_960 Hb_001825_060--Hb_001856_200 Hb_001825_060--Hb_002217_020 Hb_012573_040 Hb_012573_040 Hb_001825_060--Hb_012573_040 Hb_001825_060--Hb_012107_060 Hb_141990_040 Hb_141990_040 Hb_001825_060--Hb_141990_040 Hb_004324_090 Hb_004324_090 Hb_012107_060--Hb_004324_090 Hb_000069_420 Hb_000069_420 Hb_012107_060--Hb_000069_420 Hb_004994_140 Hb_004994_140 Hb_012107_060--Hb_004994_140 Hb_012107_060--Hb_158445_010 Hb_002878_020 Hb_002878_020 Hb_012107_060--Hb_002878_020 Hb_000250_060 Hb_000250_060 Hb_012107_060--Hb_000250_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.7601 42.0446 34.8069 16.734 12.0977 15.0729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.6175 68.301 65.1584 33.9766 20.6693

CAGE analysis