Hb_000465_310

Information

Type -
Description -
Location Contig465: 273149-276863
Sequence    

Annotation

kegg
ID rcu:RCOM_0006420
description hypothetical protein
nr
ID XP_002531470.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q93VG8
description DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1
trembl
ID B9SZQ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0006420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43994: 273296-276843 , PASA_asmbl_43995: 273259-276853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_310 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005333_020 0.0819129519 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
3 Hb_006588_090 0.0997649021 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
4 Hb_000174_200 0.1012863404 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
5 Hb_005144_040 0.1053266764 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
6 Hb_003878_140 0.1072418405 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
7 Hb_002977_010 0.1076857298 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
8 Hb_063100_010 0.1090358489 - - TATA box-binding protein-associated factor [Populus trichocarpa]
9 Hb_153150_010 0.1093874852 - - PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit [Eucalyptus grandis]
10 Hb_005314_010 0.111268956 - - nucleotide binding protein, putative [Ricinus communis]
11 Hb_011930_010 0.1152297906 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
12 Hb_005701_040 0.1158589699 - - cellular nucleic acid binding protein, putative [Ricinus communis]
13 Hb_005399_020 0.1168579303 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
14 Hb_005147_110 0.1185881003 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
15 Hb_183510_010 0.1196945586 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
16 Hb_004324_280 0.119703739 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
17 Hb_001584_170 0.1224309222 - - neutral/alkaline invertase [Manihot esculenta]
18 Hb_045046_010 0.1229197326 transcription factor TF Family: TUB hypothetical protein POPTR_0011s11070g [Populus trichocarpa]
19 Hb_024399_010 0.1238731878 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
20 Hb_001720_010 0.1239491155 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000465_310 Hb_000465_310 Hb_005333_020 Hb_005333_020 Hb_000465_310--Hb_005333_020 Hb_006588_090 Hb_006588_090 Hb_000465_310--Hb_006588_090 Hb_000174_200 Hb_000174_200 Hb_000465_310--Hb_000174_200 Hb_005144_040 Hb_005144_040 Hb_000465_310--Hb_005144_040 Hb_003878_140 Hb_003878_140 Hb_000465_310--Hb_003878_140 Hb_002977_010 Hb_002977_010 Hb_000465_310--Hb_002977_010 Hb_153150_010 Hb_153150_010 Hb_005333_020--Hb_153150_010 Hb_005147_110 Hb_005147_110 Hb_005333_020--Hb_005147_110 Hb_001975_070 Hb_001975_070 Hb_005333_020--Hb_001975_070 Hb_011930_010 Hb_011930_010 Hb_005333_020--Hb_011930_010 Hb_000640_210 Hb_000640_210 Hb_005333_020--Hb_000640_210 Hb_006588_090--Hb_005333_020 Hb_183510_010 Hb_183510_010 Hb_006588_090--Hb_183510_010 Hb_007416_200 Hb_007416_200 Hb_006588_090--Hb_007416_200 Hb_001720_010 Hb_001720_010 Hb_006588_090--Hb_001720_010 Hb_025048_030 Hb_025048_030 Hb_006588_090--Hb_025048_030 Hb_000076_290 Hb_000076_290 Hb_000174_200--Hb_000076_290 Hb_000174_200--Hb_000640_210 Hb_004032_350 Hb_004032_350 Hb_000174_200--Hb_004032_350 Hb_015401_020 Hb_015401_020 Hb_000174_200--Hb_015401_020 Hb_000322_170 Hb_000322_170 Hb_000174_200--Hb_000322_170 Hb_000174_200--Hb_005144_040 Hb_002270_010 Hb_002270_010 Hb_005144_040--Hb_002270_010 Hb_001498_030 Hb_001498_030 Hb_005144_040--Hb_001498_030 Hb_005144_040--Hb_000076_290 Hb_005144_040--Hb_000640_210 Hb_009404_010 Hb_009404_010 Hb_005144_040--Hb_009404_010 Hb_000224_060 Hb_000224_060 Hb_003878_140--Hb_000224_060 Hb_003878_140--Hb_002977_010 Hb_001616_050 Hb_001616_050 Hb_003878_140--Hb_001616_050 Hb_001584_170 Hb_001584_170 Hb_003878_140--Hb_001584_170 Hb_000865_080 Hb_000865_080 Hb_003878_140--Hb_000865_080 Hb_017075_030 Hb_017075_030 Hb_003878_140--Hb_017075_030 Hb_032202_240 Hb_032202_240 Hb_002977_010--Hb_032202_240 Hb_006316_070 Hb_006316_070 Hb_002977_010--Hb_006316_070 Hb_002977_010--Hb_001616_050 Hb_002849_080 Hb_002849_080 Hb_002977_010--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_002977_010--Hb_148209_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
315.707 202.384 52.5525 27.4399 210.709 242.403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
141.186 97.7317 123.037 24.9735 15.7839

CAGE analysis