Hb_000465_350

Information

Type transcription factor
Description TF Family: ERF
Location Contig465: 345189-346043
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07910g
description POPTRDRAFT_553919; hypothetical protein
nr
ID XP_012070060.1
description PREDICTED: ethylene-responsive transcription factor 2 [Jatropha curcas]
swissprot
ID O80337
description Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2
trembl
ID A0A067KUN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03452 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_350 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2 [Jatropha curcas]
2 Hb_002048_070 0.092465411 - - hypothetical protein JCGZ_15146 [Jatropha curcas]
3 Hb_023386_060 0.0943051332 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
4 Hb_001141_210 0.135679862 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
5 Hb_002676_110 0.138631099 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 2-like [Gossypium raimondii]
6 Hb_000060_080 0.1386624091 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
7 Hb_003968_010 0.1430435265 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_010721_010 0.1434022838 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
9 Hb_001663_090 0.1532766169 - - ribonuclease t2, putative [Ricinus communis]
10 Hb_138086_010 0.155440478 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
11 Hb_170632_010 0.1557761207 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
12 Hb_004785_160 0.1599565478 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
13 Hb_004096_140 0.1603529112 - - Lipase, putative [Ricinus communis]
14 Hb_008725_030 0.1604338579 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002973_070 0.1607958931 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
16 Hb_029622_090 0.1625948909 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2-like [Jatropha curcas]
17 Hb_012272_010 0.1629528453 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_004324_100 0.1631725595 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
19 Hb_001430_010 0.1645802448 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Jatropha curcas]
20 Hb_070634_010 0.1678693362 - - TMV resistance protein N, putative [Ricinus communis]

Gene co-expression network

sample Hb_000465_350 Hb_000465_350 Hb_002048_070 Hb_002048_070 Hb_000465_350--Hb_002048_070 Hb_023386_060 Hb_023386_060 Hb_000465_350--Hb_023386_060 Hb_001141_210 Hb_001141_210 Hb_000465_350--Hb_001141_210 Hb_002676_110 Hb_002676_110 Hb_000465_350--Hb_002676_110 Hb_000060_080 Hb_000060_080 Hb_000465_350--Hb_000060_080 Hb_003968_010 Hb_003968_010 Hb_000465_350--Hb_003968_010 Hb_002048_070--Hb_023386_060 Hb_029622_090 Hb_029622_090 Hb_002048_070--Hb_029622_090 Hb_010721_010 Hb_010721_010 Hb_002048_070--Hb_010721_010 Hb_001663_090 Hb_001663_090 Hb_002048_070--Hb_001663_090 Hb_011915_020 Hb_011915_020 Hb_002048_070--Hb_011915_020 Hb_023386_060--Hb_010721_010 Hb_001430_010 Hb_001430_010 Hb_023386_060--Hb_001430_010 Hb_023386_060--Hb_011915_020 Hb_023386_060--Hb_001663_090 Hb_004785_160 Hb_004785_160 Hb_001141_210--Hb_004785_160 Hb_002774_180 Hb_002774_180 Hb_001141_210--Hb_002774_180 Hb_000031_160 Hb_000031_160 Hb_001141_210--Hb_000031_160 Hb_002973_070 Hb_002973_070 Hb_001141_210--Hb_002973_070 Hb_138086_010 Hb_138086_010 Hb_001141_210--Hb_138086_010 Hb_070634_010 Hb_070634_010 Hb_001141_210--Hb_070634_010 Hb_002676_110--Hb_001663_090 Hb_076771_010 Hb_076771_010 Hb_002676_110--Hb_076771_010 Hb_002676_110--Hb_000060_080 Hb_004631_100 Hb_004631_100 Hb_002676_110--Hb_004631_100 Hb_002676_110--Hb_010721_010 Hb_002676_110--Hb_070634_010 Hb_170632_010 Hb_170632_010 Hb_000060_080--Hb_170632_010 Hb_000060_080--Hb_001663_090 Hb_001562_030 Hb_001562_030 Hb_000060_080--Hb_001562_030 Hb_000060_080--Hb_004631_100 Hb_000975_090 Hb_000975_090 Hb_000060_080--Hb_000975_090 Hb_008725_030 Hb_008725_030 Hb_003968_010--Hb_008725_030 Hb_004096_140 Hb_004096_140 Hb_003968_010--Hb_004096_140 Hb_138705_010 Hb_138705_010 Hb_003968_010--Hb_138705_010 Hb_096974_010 Hb_096974_010 Hb_003968_010--Hb_096974_010 Hb_003050_170 Hb_003050_170 Hb_003968_010--Hb_003050_170 Hb_001019_140 Hb_001019_140 Hb_003968_010--Hb_001019_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0269201 18.1372 18.9278 20.7597 0.0540506 0.0315887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.247379 1.21581 0.176966 4.87114 0.785937

CAGE analysis