Hb_000465_360

Information

Type -
Description -
Location Contig465: 350022-354517
Sequence    

Annotation

kegg
ID tcc:TCM_005708
description Proteasome component (PCI) domain protein isoform 1
nr
ID KDO85521.1
description hypothetical protein CISIN_1g024854mg [Citrus sinensis]
swissprot
ID Q94JU3
description COP9 signalosome complex subunit 7 OS=Arabidopsis thaliana GN=CSN7 PE=1 SV=1
trembl
ID A0A067HCL1
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024854mg PE=4 SV=1
Gene Ontology
ID GO:0006464
description cop9 signalosome complex subunit 7-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_360 0.0 - - hypothetical protein CISIN_1g024854mg [Citrus sinensis]
2 Hb_017524_010 0.1950119508 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
3 Hb_004218_230 0.2013500582 - - Peptide transporter, putative [Ricinus communis]
4 Hb_001269_280 0.2094860358 - - -
5 Hb_009252_110 0.2241846485 - - hypothetical protein JCGZ_11492 [Jatropha curcas]
6 Hb_000127_070 0.226194037 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
7 Hb_005888_040 0.2286531046 - - PREDICTED: gibberellin 20 oxidase 2 [Jatropha curcas]
8 Hb_062226_080 0.2308323277 - - -
9 Hb_105446_010 0.2310626535 - - -
10 Hb_002267_040 0.2339638942 - - -
11 Hb_000751_210 0.2342486086 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
12 Hb_000504_050 0.2379754906 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
13 Hb_132438_010 0.2402194907 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
14 Hb_009543_040 0.2436667792 - - -
15 Hb_015026_010 0.2437999457 - - -
16 Hb_005464_010 0.2445435067 - - Thioredoxin H-type, putative [Ricinus communis]
17 Hb_112011_010 0.2486536109 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
18 Hb_000658_020 0.2502138381 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
19 Hb_017866_010 0.250256742 - - kinase family protein [Populus trichocarpa]
20 Hb_000316_080 0.2506803088 - - ENTH/VHS family protein [Theobroma cacao]

Gene co-expression network

sample Hb_000465_360 Hb_000465_360 Hb_017524_010 Hb_017524_010 Hb_000465_360--Hb_017524_010 Hb_004218_230 Hb_004218_230 Hb_000465_360--Hb_004218_230 Hb_001269_280 Hb_001269_280 Hb_000465_360--Hb_001269_280 Hb_009252_110 Hb_009252_110 Hb_000465_360--Hb_009252_110 Hb_000127_070 Hb_000127_070 Hb_000465_360--Hb_000127_070 Hb_005888_040 Hb_005888_040 Hb_000465_360--Hb_005888_040 Hb_124302_030 Hb_124302_030 Hb_017524_010--Hb_124302_030 Hb_001749_030 Hb_001749_030 Hb_017524_010--Hb_001749_030 Hb_069232_010 Hb_069232_010 Hb_017524_010--Hb_069232_010 Hb_000844_010 Hb_000844_010 Hb_017524_010--Hb_000844_010 Hb_017417_020 Hb_017417_020 Hb_017524_010--Hb_017417_020 Hb_004218_230--Hb_000127_070 Hb_000504_050 Hb_000504_050 Hb_004218_230--Hb_000504_050 Hb_002110_210 Hb_002110_210 Hb_004218_230--Hb_002110_210 Hb_002735_010 Hb_002735_010 Hb_004218_230--Hb_002735_010 Hb_027445_080 Hb_027445_080 Hb_004218_230--Hb_027445_080 Hb_017661_020 Hb_017661_020 Hb_004218_230--Hb_017661_020 Hb_005464_010 Hb_005464_010 Hb_001269_280--Hb_005464_010 Hb_002368_080 Hb_002368_080 Hb_001269_280--Hb_002368_080 Hb_022425_010 Hb_022425_010 Hb_001269_280--Hb_022425_010 Hb_001369_530 Hb_001369_530 Hb_001269_280--Hb_001369_530 Hb_011344_100 Hb_011344_100 Hb_001269_280--Hb_011344_100 Hb_009252_110--Hb_005888_040 Hb_002267_040 Hb_002267_040 Hb_009252_110--Hb_002267_040 Hb_062226_080 Hb_062226_080 Hb_009252_110--Hb_062226_080 Hb_015026_010 Hb_015026_010 Hb_009252_110--Hb_015026_010 Hb_105446_010 Hb_105446_010 Hb_009252_110--Hb_105446_010 Hb_066350_010 Hb_066350_010 Hb_009252_110--Hb_066350_010 Hb_000127_070--Hb_017661_020 Hb_000127_070--Hb_002735_010 Hb_000127_070--Hb_002110_210 Hb_005147_020 Hb_005147_020 Hb_000127_070--Hb_005147_020 Hb_004590_010 Hb_004590_010 Hb_000127_070--Hb_004590_010 Hb_005888_040--Hb_062226_080 Hb_005888_040--Hb_002267_040 Hb_005888_040--Hb_015026_010 Hb_005888_040--Hb_105446_010 Hb_005888_040--Hb_066350_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.312059 0 0.369904 0.0841539 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.13433 0

CAGE analysis