Hb_000465_390

Information

Type -
Description -
Location Contig465: 376542-381343
Sequence    

Annotation

kegg
ID rcu:RCOM_0191600
description Ubiquitin carboxyl-terminal hydrolase isozyme L3, putative (EC:3.4.19.12)
nr
ID XP_012070062.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
swissprot
ID Q2TBG8
description Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Bos taurus GN=UCHL3 PE=2 SV=1
trembl
ID A0A067KY60
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_03454 PE=3 SV=1
Gene Ontology
ID GO:0005829
description ubiquitin carboxyl-terminal hydrolase isozyme l3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44001: 376543-381115 , PASA_asmbl_44002: 377477-378751
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_390 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
2 Hb_001386_040 0.067790806 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
3 Hb_006693_020 0.0717225994 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
4 Hb_000431_170 0.0722751654 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
5 Hb_001863_430 0.0754356515 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
6 Hb_000529_030 0.0762784616 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000948_160 0.0788617111 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
8 Hb_001341_150 0.0810087959 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
9 Hb_007928_030 0.0815928049 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
10 Hb_028396_010 0.0824682468 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
11 Hb_002078_140 0.0828140784 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
12 Hb_150651_040 0.0828595363 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
13 Hb_002171_060 0.0830418947 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000261_160 0.0832287708 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
15 Hb_005391_040 0.0837937932 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]
16 Hb_002893_050 0.0842714294 - - hypothetical protein POPTR_0006s26510g [Populus trichocarpa]
17 Hb_007894_060 0.0849575377 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
18 Hb_001279_080 0.085028696 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
19 Hb_008554_060 0.085386168 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
20 Hb_189216_020 0.0863269474 - - PREDICTED: translin [Jatropha curcas]

Gene co-expression network

sample Hb_000465_390 Hb_000465_390 Hb_001386_040 Hb_001386_040 Hb_000465_390--Hb_001386_040 Hb_006693_020 Hb_006693_020 Hb_000465_390--Hb_006693_020 Hb_000431_170 Hb_000431_170 Hb_000465_390--Hb_000431_170 Hb_001863_430 Hb_001863_430 Hb_000465_390--Hb_001863_430 Hb_000529_030 Hb_000529_030 Hb_000465_390--Hb_000529_030 Hb_000948_160 Hb_000948_160 Hb_000465_390--Hb_000948_160 Hb_031862_100 Hb_031862_100 Hb_001386_040--Hb_031862_100 Hb_001386_040--Hb_000948_160 Hb_002183_060 Hb_002183_060 Hb_001386_040--Hb_002183_060 Hb_007928_030 Hb_007928_030 Hb_001386_040--Hb_007928_030 Hb_000053_020 Hb_000053_020 Hb_001386_040--Hb_000053_020 Hb_000390_300 Hb_000390_300 Hb_006693_020--Hb_000390_300 Hb_006693_020--Hb_000431_170 Hb_000331_200 Hb_000331_200 Hb_006693_020--Hb_000331_200 Hb_004108_070 Hb_004108_070 Hb_006693_020--Hb_004108_070 Hb_000317_390 Hb_000317_390 Hb_006693_020--Hb_000317_390 Hb_000431_170--Hb_000948_160 Hb_000081_160 Hb_000081_160 Hb_000431_170--Hb_000081_160 Hb_000460_030 Hb_000460_030 Hb_000431_170--Hb_000460_030 Hb_000431_170--Hb_000390_300 Hb_010098_050 Hb_010098_050 Hb_000431_170--Hb_010098_050 Hb_001016_150 Hb_001016_150 Hb_001863_430--Hb_001016_150 Hb_000506_070 Hb_000506_070 Hb_001863_430--Hb_000506_070 Hb_002078_140 Hb_002078_140 Hb_001863_430--Hb_002078_140 Hb_002811_170 Hb_002811_170 Hb_001863_430--Hb_002811_170 Hb_000327_230 Hb_000327_230 Hb_001863_430--Hb_000327_230 Hb_001691_140 Hb_001691_140 Hb_001863_430--Hb_001691_140 Hb_000236_390 Hb_000236_390 Hb_000529_030--Hb_000236_390 Hb_001195_480 Hb_001195_480 Hb_000529_030--Hb_001195_480 Hb_011512_070 Hb_011512_070 Hb_000529_030--Hb_011512_070 Hb_150651_040 Hb_150651_040 Hb_000529_030--Hb_150651_040 Hb_002226_060 Hb_002226_060 Hb_000529_030--Hb_002226_060 Hb_000656_240 Hb_000656_240 Hb_000529_030--Hb_000656_240 Hb_189216_020 Hb_189216_020 Hb_000948_160--Hb_189216_020 Hb_001599_040 Hb_001599_040 Hb_000948_160--Hb_001599_040 Hb_002994_030 Hb_002994_030 Hb_000948_160--Hb_002994_030 Hb_000078_120 Hb_000078_120 Hb_000948_160--Hb_000078_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.7112 15.5355 31.9658 34.6056 26.732 28.664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.4048 68.4139 21.1299 35.5243 25.436

CAGE analysis