Hb_000465_460

Information

Type -
Description -
Location Contig465: 417460-422261
Sequence    

Annotation

kegg
ID rcu:RCOM_0192250
description Plasminogen activator inhibitor 1 RNA-binding protein, putative
nr
ID XP_012070071.1
description PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03462 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44014: 417521-422229 , PASA_asmbl_44015: 417521-450277 , PASA_asmbl_44020: 417521-446647
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_460 0.0 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
2 Hb_058999_020 0.0597834014 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
3 Hb_000317_240 0.061815898 - - PREDICTED: protein DYAD [Jatropha curcas]
4 Hb_004931_070 0.0620960966 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
5 Hb_001242_060 0.063560523 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
6 Hb_001758_100 0.0638377535 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
7 Hb_001157_040 0.0640581673 - - casein kinase, putative [Ricinus communis]
8 Hb_003125_200 0.0683997913 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
9 Hb_003929_250 0.0690540272 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
10 Hb_000920_180 0.0699120861 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
11 Hb_001226_160 0.0709320853 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
12 Hb_000757_060 0.0720906843 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
13 Hb_002530_030 0.0721999423 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
14 Hb_000016_250 0.0726067927 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
15 Hb_000227_080 0.0728803164 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000563_320 0.0749713814 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
17 Hb_002044_080 0.0763594908 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
18 Hb_005779_060 0.0771311301 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
19 Hb_027380_050 0.0789558547 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
20 Hb_000041_270 0.0789998629 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000465_460 Hb_000465_460 Hb_058999_020 Hb_058999_020 Hb_000465_460--Hb_058999_020 Hb_000317_240 Hb_000317_240 Hb_000465_460--Hb_000317_240 Hb_004931_070 Hb_004931_070 Hb_000465_460--Hb_004931_070 Hb_001242_060 Hb_001242_060 Hb_000465_460--Hb_001242_060 Hb_001758_100 Hb_001758_100 Hb_000465_460--Hb_001758_100 Hb_001157_040 Hb_001157_040 Hb_000465_460--Hb_001157_040 Hb_000757_060 Hb_000757_060 Hb_058999_020--Hb_000757_060 Hb_005779_060 Hb_005779_060 Hb_058999_020--Hb_005779_060 Hb_000227_080 Hb_000227_080 Hb_058999_020--Hb_000227_080 Hb_000215_110 Hb_000215_110 Hb_058999_020--Hb_000215_110 Hb_002044_080 Hb_002044_080 Hb_058999_020--Hb_002044_080 Hb_002530_030 Hb_002530_030 Hb_000317_240--Hb_002530_030 Hb_000317_240--Hb_000757_060 Hb_000768_090 Hb_000768_090 Hb_000317_240--Hb_000768_090 Hb_000317_240--Hb_058999_020 Hb_000504_140 Hb_000504_140 Hb_000317_240--Hb_000504_140 Hb_003125_200 Hb_003125_200 Hb_004931_070--Hb_003125_200 Hb_012389_020 Hb_012389_020 Hb_004931_070--Hb_012389_020 Hb_000421_070 Hb_000421_070 Hb_004931_070--Hb_000421_070 Hb_004931_070--Hb_000317_240 Hb_004931_070--Hb_002530_030 Hb_031527_040 Hb_031527_040 Hb_001242_060--Hb_031527_040 Hb_001242_060--Hb_000757_060 Hb_000016_250 Hb_000016_250 Hb_001242_060--Hb_000016_250 Hb_000030_300 Hb_000030_300 Hb_001242_060--Hb_000030_300 Hb_000563_320 Hb_000563_320 Hb_001242_060--Hb_000563_320 Hb_001242_060--Hb_005779_060 Hb_000120_470 Hb_000120_470 Hb_001758_100--Hb_000120_470 Hb_001758_100--Hb_000504_140 Hb_008900_010 Hb_008900_010 Hb_001758_100--Hb_008900_010 Hb_001758_100--Hb_000317_240 Hb_001758_100--Hb_000757_060 Hb_000866_220 Hb_000866_220 Hb_001157_040--Hb_000866_220 Hb_001838_060 Hb_001838_060 Hb_001157_040--Hb_001838_060 Hb_001157_040--Hb_000563_320 Hb_001157_040--Hb_000016_250 Hb_000331_670 Hb_000331_670 Hb_001157_040--Hb_000331_670 Hb_000538_270 Hb_000538_270 Hb_001157_040--Hb_000538_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.7822 84.1543 69.0931 51.1004 84.3014 120.509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.7521 164.058 98.6567 74.9787 50.308

CAGE analysis