Hb_000466_090

Information

Type -
Description -
Location Contig466: 179573-183059
Sequence    

Annotation

kegg
ID rcu:RCOM_0881500
description copine, putative
nr
ID XP_012074833.1
description PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LY87
description E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1
trembl
ID A0A067KHD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08985 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase rglg2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000466_090 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
2 Hb_003189_030 0.0847659282 - - hypothetical protein Csa_4G304750 [Cucumis sativus]
3 Hb_006620_040 0.0967615292 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
4 Hb_002173_080 0.1055677818 - - alcohol dehydrogenase, putative [Ricinus communis]
5 Hb_000659_010 0.10585352 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
6 Hb_000487_150 0.110638021 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
7 Hb_001003_020 0.1113355334 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
8 Hb_035726_020 0.115374553 - - Insulinase (Peptidase family M16) family protein [Theobroma cacao]
9 Hb_004222_010 0.1209110046 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
10 Hb_039562_010 0.1212575672 - - PREDICTED: protein SRG1-like [Jatropha curcas]
11 Hb_000318_440 0.1277479435 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
12 Hb_097908_010 0.1304347181 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X2 [Jatropha curcas]
13 Hb_061195_010 0.1327063705 - - Galactose oxidase precursor, putative [Ricinus communis]
14 Hb_003968_020 0.1367885596 - - PREDICTED: limonoid UDP-glucosyltransferase-like [Glycine max]
15 Hb_004055_180 0.1384863596 - - cell wall invertase [Manihot esculenta]
16 Hb_000347_550 0.1390358254 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
17 Hb_000076_200 0.1393922203 - - conserved hypothetical protein [Ricinus communis]
18 Hb_073171_020 0.1394186885 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
19 Hb_022815_020 0.1407958974 - - PREDICTED: uncharacterized protein LOC105650107 [Jatropha curcas]
20 Hb_173448_010 0.1427905684 - - PREDICTED: galactose oxidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000466_090 Hb_000466_090 Hb_003189_030 Hb_003189_030 Hb_000466_090--Hb_003189_030 Hb_006620_040 Hb_006620_040 Hb_000466_090--Hb_006620_040 Hb_002173_080 Hb_002173_080 Hb_000466_090--Hb_002173_080 Hb_000659_010 Hb_000659_010 Hb_000466_090--Hb_000659_010 Hb_000487_150 Hb_000487_150 Hb_000466_090--Hb_000487_150 Hb_001003_020 Hb_001003_020 Hb_000466_090--Hb_001003_020 Hb_035726_020 Hb_035726_020 Hb_003189_030--Hb_035726_020 Hb_003189_030--Hb_001003_020 Hb_003189_030--Hb_002173_080 Hb_003189_030--Hb_006620_040 Hb_003189_030--Hb_000659_010 Hb_003968_020 Hb_003968_020 Hb_006620_040--Hb_003968_020 Hb_039562_010 Hb_039562_010 Hb_006620_040--Hb_039562_010 Hb_023080_010 Hb_023080_010 Hb_006620_040--Hb_023080_010 Hb_000907_190 Hb_000907_190 Hb_006620_040--Hb_000907_190 Hb_002173_080--Hb_039562_010 Hb_002173_080--Hb_000487_150 Hb_003237_040 Hb_003237_040 Hb_002173_080--Hb_003237_040 Hb_000318_440 Hb_000318_440 Hb_002173_080--Hb_000318_440 Hb_004097_080 Hb_004097_080 Hb_002173_080--Hb_004097_080 Hb_022815_020 Hb_022815_020 Hb_000659_010--Hb_022815_020 Hb_175968_010 Hb_175968_010 Hb_000659_010--Hb_175968_010 Hb_004222_010 Hb_004222_010 Hb_000659_010--Hb_004222_010 Hb_000659_010--Hb_001003_020 Hb_000659_010--Hb_035726_020 Hb_001279_220 Hb_001279_220 Hb_000659_010--Hb_001279_220 Hb_000487_150--Hb_000318_440 Hb_012532_020 Hb_012532_020 Hb_000487_150--Hb_012532_020 Hb_000127_250 Hb_000127_250 Hb_000487_150--Hb_000127_250 Hb_000059_100 Hb_000059_100 Hb_000487_150--Hb_000059_100 Hb_000487_150--Hb_039562_010 Hb_001003_020--Hb_035726_020 Hb_001003_020--Hb_022815_020 Hb_001003_020--Hb_004222_010 Hb_033843_020 Hb_033843_020 Hb_001003_020--Hb_033843_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00864386 0.0841464 0.20483 0.545107 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0308904 0 8.08363 0.687846

CAGE analysis