Hb_000470_080

Information

Type -
Description -
Location Contig470: 141340-145937
Sequence    

Annotation

kegg
ID rcu:RCOM_1667500
description Caldesmon, putative
nr
ID XP_002514483.1
description Caldesmon, putative [Ricinus communis]
swissprot
ID F4J9Q6
description Peptidyl-prolyl cis-trans isomerase FKBP43 OS=Arabidopsis thaliana GN=FKBP43 PE=2 SV=1
trembl
ID B9RL64
description Caldesmon, putative OS=Ricinus communis GN=RCOM_1667500 PE=4 SV=1
Gene Ontology
ID GO:0044238
description peptidyl-prolyl cis-trans isomerase fkbp43-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44213: 130214-145886
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000470_080 0.0 - - Caldesmon, putative [Ricinus communis]
2 Hb_007805_010 0.0856595986 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
3 Hb_005679_050 0.0893770532 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_002974_060 0.0939841511 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
5 Hb_011310_160 0.0952542662 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
6 Hb_011928_020 0.1002821185 - - something about silencing protein sas10, putative [Ricinus communis]
7 Hb_003294_090 0.1050719565 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006660_010 0.1064598934 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
9 Hb_002600_140 0.1080077566 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
10 Hb_011716_020 0.1081683046 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
11 Hb_002028_170 0.1095666722 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
12 Hb_000398_120 0.1103538754 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3-like isoform X4 [Gossypium raimondii]
13 Hb_002551_070 0.1112025731 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
14 Hb_000021_030 0.1132401503 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
15 Hb_000236_310 0.114061061 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
16 Hb_002095_010 0.1154515956 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
17 Hb_004224_020 0.1156751881 - - PREDICTED: uncharacterized protein LOC105643786 [Jatropha curcas]
18 Hb_188126_010 0.1182158579 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
19 Hb_001529_040 0.1192167887 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
20 Hb_010427_010 0.1192199381 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06191 [Jatropha curcas]

Gene co-expression network

sample Hb_000470_080 Hb_000470_080 Hb_007805_010 Hb_007805_010 Hb_000470_080--Hb_007805_010 Hb_005679_050 Hb_005679_050 Hb_000470_080--Hb_005679_050 Hb_002974_060 Hb_002974_060 Hb_000470_080--Hb_002974_060 Hb_011310_160 Hb_011310_160 Hb_000470_080--Hb_011310_160 Hb_011928_020 Hb_011928_020 Hb_000470_080--Hb_011928_020 Hb_003294_090 Hb_003294_090 Hb_000470_080--Hb_003294_090 Hb_002551_070 Hb_002551_070 Hb_007805_010--Hb_002551_070 Hb_007805_010--Hb_002974_060 Hb_007805_010--Hb_005679_050 Hb_000236_310 Hb_000236_310 Hb_007805_010--Hb_000236_310 Hb_188126_010 Hb_188126_010 Hb_007805_010--Hb_188126_010 Hb_002493_020 Hb_002493_020 Hb_005679_050--Hb_002493_020 Hb_001700_040 Hb_001700_040 Hb_005679_050--Hb_001700_040 Hb_001617_060 Hb_001617_060 Hb_005679_050--Hb_001617_060 Hb_003966_030 Hb_003966_030 Hb_005679_050--Hb_003966_030 Hb_067345_010 Hb_067345_010 Hb_005679_050--Hb_067345_010 Hb_001691_120 Hb_001691_120 Hb_005679_050--Hb_001691_120 Hb_011716_020 Hb_011716_020 Hb_002974_060--Hb_011716_020 Hb_002974_060--Hb_002551_070 Hb_002600_140 Hb_002600_140 Hb_002974_060--Hb_002600_140 Hb_001496_070 Hb_001496_070 Hb_002974_060--Hb_001496_070 Hb_000446_120 Hb_000446_120 Hb_002974_060--Hb_000446_120 Hb_116929_010 Hb_116929_010 Hb_002974_060--Hb_116929_010 Hb_000398_120 Hb_000398_120 Hb_011310_160--Hb_000398_120 Hb_006660_010 Hb_006660_010 Hb_011310_160--Hb_006660_010 Hb_003988_010 Hb_003988_010 Hb_011310_160--Hb_003988_010 Hb_025477_040 Hb_025477_040 Hb_011310_160--Hb_025477_040 Hb_010174_040 Hb_010174_040 Hb_011310_160--Hb_010174_040 Hb_011310_160--Hb_002974_060 Hb_001529_040 Hb_001529_040 Hb_011928_020--Hb_001529_040 Hb_011928_020--Hb_000398_120 Hb_003498_130 Hb_003498_130 Hb_011928_020--Hb_003498_130 Hb_002631_170 Hb_002631_170 Hb_011928_020--Hb_002631_170 Hb_000071_180 Hb_000071_180 Hb_011928_020--Hb_000071_180 Hb_003253_040 Hb_003253_040 Hb_003294_090--Hb_003253_040 Hb_005901_020 Hb_005901_020 Hb_003294_090--Hb_005901_020 Hb_002740_110 Hb_002740_110 Hb_003294_090--Hb_002740_110 Hb_010174_110 Hb_010174_110 Hb_003294_090--Hb_010174_110 Hb_015175_020 Hb_015175_020 Hb_003294_090--Hb_015175_020 Hb_002063_020 Hb_002063_020 Hb_003294_090--Hb_002063_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3236 8.66029 6.29951 8.03785 15.953 31.0186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.95011 4.6581 16.1707 23.7442 16.1142

CAGE analysis