Hb_000471_010

Information

Type -
Description -
Location Contig471: 54-13182
Sequence    

Annotation

kegg
ID rcu:RCOM_0853490
description ATP binding protein, putative
nr
ID XP_002517441.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q54DY9
description Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1
trembl
ID B9RUJ6
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0853490 PE=3 SV=1
Gene Ontology
ID GO:0005524
description probable mitochondrial chaperone bcs1-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44260: 12347-14153
cDNA
(Sanger)
(ID:Location)		 009_J12.ab1: 12347-13056 , 037_B16.ab1: 12347-13123

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000471_010 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000684_490 0.0379903606 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
3 Hb_004586_110 0.0540750878 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
4 Hb_011861_020 0.0603180479 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
5 Hb_150730_010 0.0845937143 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
6 Hb_116469_010 0.0877704929 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
7 Hb_000005_350 0.0929456983 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
8 Hb_000057_180 0.0960343174 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
9 Hb_010334_040 0.1018641882 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
10 Hb_028927_010 0.1106391253 - - leucine-rich repeat protein, putative [Ricinus communis]
11 Hb_000589_100 0.1115355944 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
12 Hb_002003_030 0.1133755028 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
13 Hb_009150_060 0.1217897402 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
14 Hb_004128_090 0.1224400979 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
15 Hb_005168_030 0.1243212504 - - unknown [Zea mays]
16 Hb_009812_010 0.125620683 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_002475_030 0.1289000009 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000723_240 0.1303970081 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
19 Hb_005010_040 0.1304718512 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
20 Hb_000834_210 0.1307862289 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000471_010 Hb_000471_010 Hb_000684_490 Hb_000684_490 Hb_000471_010--Hb_000684_490 Hb_004586_110 Hb_004586_110 Hb_000471_010--Hb_004586_110 Hb_011861_020 Hb_011861_020 Hb_000471_010--Hb_011861_020 Hb_150730_010 Hb_150730_010 Hb_000471_010--Hb_150730_010 Hb_116469_010 Hb_116469_010 Hb_000471_010--Hb_116469_010 Hb_000005_350 Hb_000005_350 Hb_000471_010--Hb_000005_350 Hb_000684_490--Hb_004586_110 Hb_000684_490--Hb_011861_020 Hb_000684_490--Hb_000005_350 Hb_010334_040 Hb_010334_040 Hb_000684_490--Hb_010334_040 Hb_000684_490--Hb_116469_010 Hb_004586_110--Hb_011861_020 Hb_009812_010 Hb_009812_010 Hb_004586_110--Hb_009812_010 Hb_009150_060 Hb_009150_060 Hb_004586_110--Hb_009150_060 Hb_005168_030 Hb_005168_030 Hb_004586_110--Hb_005168_030 Hb_011861_020--Hb_150730_010 Hb_011861_020--Hb_000005_350 Hb_011861_020--Hb_116469_010 Hb_000057_180 Hb_000057_180 Hb_011861_020--Hb_000057_180 Hb_150730_010--Hb_000057_180 Hb_002003_030 Hb_002003_030 Hb_150730_010--Hb_002003_030 Hb_009778_050 Hb_009778_050 Hb_150730_010--Hb_009778_050 Hb_150730_010--Hb_116469_010 Hb_116469_010--Hb_002003_030 Hb_028927_010 Hb_028927_010 Hb_116469_010--Hb_028927_010 Hb_116469_010--Hb_000057_180 Hb_116469_010--Hb_000005_350 Hb_000005_350--Hb_010334_040 Hb_000589_100 Hb_000589_100 Hb_000005_350--Hb_000589_100 Hb_001691_060 Hb_001691_060 Hb_000005_350--Hb_001691_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.01638 4.75173 9.79182 5.30008 0 0.00925801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.057342 0 0.0519649 27.8067 4.50292

CAGE analysis