Hb_000471_030

Information

Type -
Description -
Location Contig471: 13677-13952
Sequence    

Annotation

kegg
ID rcu:RCOM_0853510
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A078J192
description BnaA05g36930D protein OS=Brassica napus GN=BnaA05g36930D PE=4 SV=1
Gene Ontology
ID GO:0005524
description probable mitochondrial chaperone bcs1-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44260: 12347-14153
cDNA
(Sanger)
(ID:Location)		 009_J12.ab1: 12347-13056 , 037_B16.ab1: 12347-13123

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000471_030 0.0 - - -
2 Hb_006294_030 0.0620741966 - - alcohol dehydrogenase, putative [Ricinus communis]
3 Hb_012691_010 0.0888407533 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
4 Hb_004316_160 0.1022420196 - - hypothetical protein CISIN_1g047906mg, partial [Citrus sinensis]
5 Hb_068804_070 0.1180851255 - - hypothetical protein JCGZ_12627 [Jatropha curcas]
6 Hb_005743_010 0.1250065496 - - RING/U-box superfamily protein, putative [Theobroma cacao]
7 Hb_001634_030 0.1361785464 - - Receptor like protein 1, putative [Theobroma cacao]
8 Hb_002984_040 0.145467768 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_007951_020 0.1479196311 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
10 Hb_006266_010 0.1483633451 - - unnamed protein product [Vitis vinifera]
11 Hb_007643_060 0.1546101036 - - -
12 Hb_003592_060 0.1587340396 - - hypothetical protein F383_11017 [Gossypium arboreum]
13 Hb_004316_080 0.1599818033 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
14 Hb_005834_050 0.160728413 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
15 Hb_000010_150 0.1673861978 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Jatropha curcas]
16 Hb_007850_100 0.1681459662 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
17 Hb_001476_030 0.1699673942 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
18 Hb_137272_010 0.1726661962 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
19 Hb_006615_220 0.1772863175 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
20 Hb_000035_150 0.1786705654 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]

Gene co-expression network

sample Hb_000471_030 Hb_000471_030 Hb_006294_030 Hb_006294_030 Hb_000471_030--Hb_006294_030 Hb_012691_010 Hb_012691_010 Hb_000471_030--Hb_012691_010 Hb_004316_160 Hb_004316_160 Hb_000471_030--Hb_004316_160 Hb_068804_070 Hb_068804_070 Hb_000471_030--Hb_068804_070 Hb_005743_010 Hb_005743_010 Hb_000471_030--Hb_005743_010 Hb_001634_030 Hb_001634_030 Hb_000471_030--Hb_001634_030 Hb_006294_030--Hb_012691_010 Hb_006294_030--Hb_001634_030 Hb_005834_050 Hb_005834_050 Hb_006294_030--Hb_005834_050 Hb_006294_030--Hb_068804_070 Hb_002984_040 Hb_002984_040 Hb_006294_030--Hb_002984_040 Hb_007643_060 Hb_007643_060 Hb_012691_010--Hb_007643_060 Hb_012691_010--Hb_005834_050 Hb_007951_020 Hb_007951_020 Hb_012691_010--Hb_007951_020 Hb_012691_010--Hb_005743_010 Hb_004316_160--Hb_006294_030 Hb_004316_160--Hb_012691_010 Hb_001476_030 Hb_001476_030 Hb_004316_160--Hb_001476_030 Hb_007654_010 Hb_007654_010 Hb_004316_160--Hb_007654_010 Hb_004316_160--Hb_068804_070 Hb_068804_070--Hb_005743_010 Hb_003592_060 Hb_003592_060 Hb_068804_070--Hb_003592_060 Hb_006266_010 Hb_006266_010 Hb_068804_070--Hb_006266_010 Hb_004316_080 Hb_004316_080 Hb_068804_070--Hb_004316_080 Hb_002217_060 Hb_002217_060 Hb_068804_070--Hb_002217_060 Hb_005743_010--Hb_003592_060 Hb_005743_010--Hb_006266_010 Hb_006615_220 Hb_006615_220 Hb_005743_010--Hb_006615_220 Hb_005743_010--Hb_007643_060 Hb_005743_010--Hb_007951_020 Hb_004551_050 Hb_004551_050 Hb_001634_030--Hb_004551_050 Hb_137272_010 Hb_137272_010 Hb_001634_030--Hb_137272_010 Hb_000567_060 Hb_000567_060 Hb_001634_030--Hb_000567_060 Hb_001634_030--Hb_068804_070 Hb_003881_020 Hb_003881_020 Hb_001634_030--Hb_003881_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 30.3556 191.166 20.7517 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.466786 0 0 77.2363 30.2456

CAGE analysis