Hb_000472_040

Information

Type -
Description -
Location Contig472: 93995-94375
Sequence    

Annotation

kegg
ID pmum:103338799
description protein sgt1-like
nr
ID XP_012092998.1
description PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J8R6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05881 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44314: 93806-94584
cDNA
(Sanger)
(ID:Location)		 001_L07.ab1: 93895-94249 , 016_A11.ab1: 93820-94262 , 016_N03.ab1: 93895-94249 , 034_G11.ab1: 93893-94252 , 034_N11.ab1: 93895-94249 , 044_F09.ab1: 93895-94249 , 050_E05.ab1: 93895-94251 , 053_D22.ab1: 93820-94262

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000472_040 0.0 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
2 Hb_116701_020 0.1171844979 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001141_080 0.1196583368 - - PREDICTED: protein RDM1 [Jatropha curcas]
4 Hb_001386_130 0.1250307531 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
5 Hb_000567_200 0.1276904446 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
6 Hb_002924_050 0.1280902521 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
7 Hb_003428_110 0.130000232 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
8 Hb_000163_290 0.1308250578 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
9 Hb_017434_090 0.1312482828 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002759_250 0.1341731651 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
11 Hb_001930_070 0.1344284876 - - -
12 Hb_000500_310 0.1372032903 - - -
13 Hb_178968_150 0.1380264503 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000300_620 0.1396833744 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
15 Hb_006499_010 0.1406454095 - - -
16 Hb_000590_090 0.1422770275 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_004738_090 0.1428177421 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000957_040 0.1459386152 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
19 Hb_001518_020 0.1480581808 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
20 Hb_002249_140 0.1505555933 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]

Gene co-expression network

sample Hb_000472_040 Hb_000472_040 Hb_116701_020 Hb_116701_020 Hb_000472_040--Hb_116701_020 Hb_001141_080 Hb_001141_080 Hb_000472_040--Hb_001141_080 Hb_001386_130 Hb_001386_130 Hb_000472_040--Hb_001386_130 Hb_000567_200 Hb_000567_200 Hb_000472_040--Hb_000567_200 Hb_002924_050 Hb_002924_050 Hb_000472_040--Hb_002924_050 Hb_003428_110 Hb_003428_110 Hb_000472_040--Hb_003428_110 Hb_116701_020--Hb_001386_130 Hb_001780_060 Hb_001780_060 Hb_116701_020--Hb_001780_060 Hb_004813_010 Hb_004813_010 Hb_116701_020--Hb_004813_010 Hb_000590_090 Hb_000590_090 Hb_116701_020--Hb_000590_090 Hb_005389_140 Hb_005389_140 Hb_116701_020--Hb_005389_140 Hb_005147_110 Hb_005147_110 Hb_001141_080--Hb_005147_110 Hb_002249_140 Hb_002249_140 Hb_001141_080--Hb_002249_140 Hb_009382_020 Hb_009382_020 Hb_001141_080--Hb_009382_020 Hb_004310_060 Hb_004310_060 Hb_001141_080--Hb_004310_060 Hb_008725_250 Hb_008725_250 Hb_001141_080--Hb_008725_250 Hb_001141_080--Hb_003428_110 Hb_000680_150 Hb_000680_150 Hb_001386_130--Hb_000680_150 Hb_001386_130--Hb_000590_090 Hb_001386_130--Hb_004813_010 Hb_001514_020 Hb_001514_020 Hb_001386_130--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_001386_130--Hb_001493_100 Hb_000567_200--Hb_003428_110 Hb_000163_290 Hb_000163_290 Hb_000567_200--Hb_000163_290 Hb_000567_200--Hb_002924_050 Hb_006499_010 Hb_006499_010 Hb_000567_200--Hb_006499_010 Hb_001930_070 Hb_001930_070 Hb_000567_200--Hb_001930_070 Hb_001518_020 Hb_001518_020 Hb_000567_200--Hb_001518_020 Hb_002924_050--Hb_001930_070 Hb_002924_050--Hb_116701_020 Hb_002924_050--Hb_006499_010 Hb_000784_130 Hb_000784_130 Hb_002924_050--Hb_000784_130 Hb_017434_090 Hb_017434_090 Hb_003428_110--Hb_017434_090 Hb_003428_110--Hb_001518_020 Hb_003428_110--Hb_009382_020 Hb_003747_240 Hb_003747_240 Hb_003428_110--Hb_003747_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1214.17 109.62 54.3339 33.6779 559.827 433.497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
789.592 319.778 520.279 226.058 23.2028

CAGE analysis