Hb_000473_020

Information

Type -
Description -
Location Contig473: 49237-49659
Sequence    

Annotation

kegg
ID rcu:RCOM_1190520
description expressed protein, putative
nr
ID XP_002516330.1
description expressed protein, putative [Ricinus communis]
swissprot
ID Q59ZU1
description Type 1 phosphatases regulator YPI2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YPI2 PE=3 SV=1
trembl
ID B9RRG1
description Expressed protein, putative OS=Ricinus communis GN=RCOM_1190520 PE=4 SV=1
Gene Ontology
ID GO:0000164
description type 1 phosphatases regulator ypi2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44405: 47773-51060
cDNA
(Sanger)
(ID:Location)		 005_I04.ab1: 47773-49774 , 040_N24.ab1: 47773-49774

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000473_020 0.0 - - expressed protein, putative [Ricinus communis]
2 Hb_003536_110 0.0981682449 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
3 Hb_005667_040 0.1061295623 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
4 Hb_005000_330 0.111255865 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004195_080 0.112569552 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
6 Hb_026314_020 0.1138798452 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
7 Hb_000359_150 0.1146346684 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
8 Hb_005867_020 0.1164022341 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
9 Hb_016604_030 0.116866542 - - histone H4 [Zea mays]
10 Hb_007113_070 0.1177088281 - - protein with unknown function [Ricinus communis]
11 Hb_001511_260 0.1197571951 - - tryptophan biosynthesis protein, putative [Ricinus communis]
12 Hb_001538_090 0.1213063711 - - 40S ribosomal protein S29 [Morus notabilis]
13 Hb_154948_040 0.1259372588 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
14 Hb_000803_200 0.125960164 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
15 Hb_000107_300 0.1265263552 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
16 Hb_000584_020 0.1276381611 - - hypothetical protein PHAVU_002G233500g, partial [Phaseolus vulgaris]
17 Hb_002686_110 0.1276486229 - - -
18 Hb_004055_070 0.1299902558 - - PREDICTED: uncharacterized protein LOC105631439 isoform X2 [Jatropha curcas]
19 Hb_002343_060 0.13278625 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
20 Hb_004784_020 0.1335558176 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]

Gene co-expression network

sample Hb_000473_020 Hb_000473_020 Hb_003536_110 Hb_003536_110 Hb_000473_020--Hb_003536_110 Hb_005667_040 Hb_005667_040 Hb_000473_020--Hb_005667_040 Hb_005000_330 Hb_005000_330 Hb_000473_020--Hb_005000_330 Hb_004195_080 Hb_004195_080 Hb_000473_020--Hb_004195_080 Hb_026314_020 Hb_026314_020 Hb_000473_020--Hb_026314_020 Hb_000359_150 Hb_000359_150 Hb_000473_020--Hb_000359_150 Hb_001538_090 Hb_001538_090 Hb_003536_110--Hb_001538_090 Hb_031089_040 Hb_031089_040 Hb_003536_110--Hb_031089_040 Hb_078185_010 Hb_078185_010 Hb_003536_110--Hb_078185_010 Hb_001699_040 Hb_001699_040 Hb_003536_110--Hb_001699_040 Hb_005867_020 Hb_005867_020 Hb_003536_110--Hb_005867_020 Hb_002686_110 Hb_002686_110 Hb_005667_040--Hb_002686_110 Hb_004709_010 Hb_004709_010 Hb_005667_040--Hb_004709_010 Hb_014720_040 Hb_014720_040 Hb_005667_040--Hb_014720_040 Hb_005278_020 Hb_005278_020 Hb_005667_040--Hb_005278_020 Hb_005667_040--Hb_026314_020 Hb_006573_020 Hb_006573_020 Hb_005667_040--Hb_006573_020 Hb_004176_070 Hb_004176_070 Hb_005000_330--Hb_004176_070 Hb_005000_330--Hb_000359_150 Hb_005000_330--Hb_002686_110 Hb_000167_080 Hb_000167_080 Hb_005000_330--Hb_000167_080 Hb_004784_020 Hb_004784_020 Hb_005000_330--Hb_004784_020 Hb_004195_080--Hb_003536_110 Hb_001865_090 Hb_001865_090 Hb_004195_080--Hb_001865_090 Hb_000029_070 Hb_000029_070 Hb_004195_080--Hb_000029_070 Hb_012796_020 Hb_012796_020 Hb_004195_080--Hb_012796_020 Hb_004195_080--Hb_005867_020 Hb_026314_020--Hb_005278_020 Hb_000826_100 Hb_000826_100 Hb_026314_020--Hb_000826_100 Hb_002343_060 Hb_002343_060 Hb_026314_020--Hb_002343_060 Hb_000005_090 Hb_000005_090 Hb_026314_020--Hb_000005_090 Hb_019762_020 Hb_019762_020 Hb_026314_020--Hb_019762_020 Hb_001318_250 Hb_001318_250 Hb_026314_020--Hb_001318_250 Hb_000261_160 Hb_000261_160 Hb_000359_150--Hb_000261_160 Hb_002171_060 Hb_002171_060 Hb_000359_150--Hb_002171_060 Hb_001016_150 Hb_001016_150 Hb_000359_150--Hb_001016_150 Hb_000599_260 Hb_000599_260 Hb_000359_150--Hb_000599_260 Hb_000690_190 Hb_000690_190 Hb_000359_150--Hb_000690_190 Hb_004041_020 Hb_004041_020 Hb_000359_150--Hb_004041_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.4205 17.3326 82.7571 138.235 33.7093 105.876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.5268 181.498 62.5968 27.9212 37.8242

CAGE analysis