Hb_000473_040

Information

Type transcription factor
Description TF Family: Coactivator p15
Location Contig473: 58162-60757
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G154400g
description hypothetical protein
nr
ID XP_012081960.1
description PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
swissprot
ID O65154
description RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1
trembl
ID A0A067KC90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19293 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna polymerase ii transcriptional coactivator kiwi

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44407: 52446-57235 , PASA_asmbl_44409: 58228-60782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000473_040 0.0 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
2 Hb_011360_140 0.0546434524 - - 40S ribosomal protein S19, putative [Ricinus communis]
3 Hb_012762_050 0.0611764133 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
4 Hb_135545_010 0.0655443027 - - calmodulin binding protein, putative [Ricinus communis]
5 Hb_005332_070 0.0704419105 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
6 Hb_002007_060 0.0711280171 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
7 Hb_011571_020 0.0722446495 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
8 Hb_001828_090 0.0736889263 - - prohibitin, putative [Ricinus communis]
9 Hb_009767_120 0.0767838869 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
10 Hb_000221_220 0.0796856728 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
11 Hb_001512_070 0.0799162741 - - PREDICTED: ras-related protein RABB1b [Malus domestica]
12 Hb_005535_050 0.0814731666 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
13 Hb_000015_080 0.0815322045 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
14 Hb_003939_080 0.0818471295 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001195_760 0.0821284316 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
16 Hb_001301_160 0.084132593 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
17 Hb_019962_030 0.0841640008 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
18 Hb_001369_650 0.0846003247 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
19 Hb_002868_010 0.0848037852 - - 60S ribosomal protein L30, putative [Ricinus communis]
20 Hb_000019_230 0.0848329812 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000473_040 Hb_000473_040 Hb_011360_140 Hb_011360_140 Hb_000473_040--Hb_011360_140 Hb_012762_050 Hb_012762_050 Hb_000473_040--Hb_012762_050 Hb_135545_010 Hb_135545_010 Hb_000473_040--Hb_135545_010 Hb_005332_070 Hb_005332_070 Hb_000473_040--Hb_005332_070 Hb_002007_060 Hb_002007_060 Hb_000473_040--Hb_002007_060 Hb_011571_020 Hb_011571_020 Hb_000473_040--Hb_011571_020 Hb_011360_140--Hb_011571_020 Hb_000933_180 Hb_000933_180 Hb_011360_140--Hb_000933_180 Hb_000392_440 Hb_000392_440 Hb_011360_140--Hb_000392_440 Hb_001828_090 Hb_001828_090 Hb_011360_140--Hb_001828_090 Hb_005993_040 Hb_005993_040 Hb_011360_140--Hb_005993_040 Hb_012762_050--Hb_135545_010 Hb_000221_220 Hb_000221_220 Hb_012762_050--Hb_000221_220 Hb_001512_070 Hb_001512_070 Hb_012762_050--Hb_001512_070 Hb_012762_050--Hb_002007_060 Hb_012762_050--Hb_011571_020 Hb_001301_160 Hb_001301_160 Hb_135545_010--Hb_001301_160 Hb_000139_350 Hb_000139_350 Hb_135545_010--Hb_000139_350 Hb_135545_010--Hb_002007_060 Hb_135545_010--Hb_011571_020 Hb_005332_070--Hb_011571_020 Hb_000089_220 Hb_000089_220 Hb_005332_070--Hb_000089_220 Hb_005332_070--Hb_011360_140 Hb_005332_070--Hb_012762_050 Hb_003001_140 Hb_003001_140 Hb_005332_070--Hb_003001_140 Hb_023226_040 Hb_023226_040 Hb_002007_060--Hb_023226_040 Hb_000866_270 Hb_000866_270 Hb_002007_060--Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_002007_060--Hb_001259_090 Hb_002007_060--Hb_001301_160 Hb_000000_160 Hb_000000_160 Hb_002007_060--Hb_000000_160 Hb_005539_350 Hb_005539_350 Hb_002007_060--Hb_005539_350 Hb_011571_020--Hb_003001_140 Hb_011571_020--Hb_005993_040 Hb_011571_020--Hb_001301_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
207.85 83.3552 95.831 55.9639 193.538 210.011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
162.864 278.604 151.648 43.9874 37.1605

CAGE analysis