Hb_000473_150

Information

Type -
Description -
Location Contig473: 275221-279444
Sequence    

Annotation

kegg
ID rcu:RCOM_0442550
description pullulanase, putative (EC:3.2.1.41)
nr
ID XP_012080994.1
description PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q8GTR4
description Pullulanase 1, chloroplastic OS=Arabidopsis thaliana GN=PU1 PE=2 SV=2
trembl
ID B9T3G1
description Pullulanase, putative OS=Ricinus communis GN=RCOM_0442550 PE=4 SV=1
Gene Ontology
ID GO:0043169
description pullulanase chloroplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44425: 206303-279082
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000473_150 0.0 - - PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]
2 Hb_019863_060 0.0715325411 - - PREDICTED: target of Myb protein 1-like [Populus euphratica]
3 Hb_000059_130 0.0936571967 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
4 Hb_000413_250 0.0983773505 - - Cysteine-rich RLK 29 [Theobroma cacao]
5 Hb_001951_100 0.1052871115 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
6 Hb_000445_130 0.1058267903 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
7 Hb_002918_320 0.1117896124 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
8 Hb_007850_010 0.1131862008 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
9 Hb_000270_230 0.1134304194 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
10 Hb_007012_040 0.1139600746 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
11 Hb_000676_040 0.1183429256 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
12 Hb_004696_070 0.1196337787 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
13 Hb_000856_020 0.1201257836 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
14 Hb_008686_020 0.1202949098 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
15 Hb_004994_300 0.1207605239 - - synaptotagmin, putative [Ricinus communis]
16 Hb_000331_100 0.12081638 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
17 Hb_002248_120 0.1210547957 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
18 Hb_001561_010 0.1216277883 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
19 Hb_013405_180 0.1240025588 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
20 Hb_000613_220 0.1250095178 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000473_150 Hb_000473_150 Hb_019863_060 Hb_019863_060 Hb_000473_150--Hb_019863_060 Hb_000059_130 Hb_000059_130 Hb_000473_150--Hb_000059_130 Hb_000413_250 Hb_000413_250 Hb_000473_150--Hb_000413_250 Hb_001951_100 Hb_001951_100 Hb_000473_150--Hb_001951_100 Hb_000445_130 Hb_000445_130 Hb_000473_150--Hb_000445_130 Hb_002918_320 Hb_002918_320 Hb_000473_150--Hb_002918_320 Hb_019863_060--Hb_000059_130 Hb_002154_020 Hb_002154_020 Hb_019863_060--Hb_002154_020 Hb_002804_010 Hb_002804_010 Hb_019863_060--Hb_002804_010 Hb_002387_040 Hb_002387_040 Hb_019863_060--Hb_002387_040 Hb_002248_120 Hb_002248_120 Hb_019863_060--Hb_002248_120 Hb_000216_020 Hb_000216_020 Hb_000059_130--Hb_000216_020 Hb_008667_060 Hb_008667_060 Hb_000059_130--Hb_008667_060 Hb_000805_190 Hb_000805_190 Hb_000059_130--Hb_000805_190 Hb_000069_780 Hb_000069_780 Hb_000059_130--Hb_000069_780 Hb_000371_060 Hb_000371_060 Hb_000059_130--Hb_000371_060 Hb_000413_250--Hb_002918_320 Hb_000243_400 Hb_000243_400 Hb_000413_250--Hb_000243_400 Hb_004696_070 Hb_004696_070 Hb_000413_250--Hb_004696_070 Hb_000413_250--Hb_001951_100 Hb_000133_090 Hb_000133_090 Hb_000413_250--Hb_000133_090 Hb_000331_100 Hb_000331_100 Hb_000413_250--Hb_000331_100 Hb_008686_020 Hb_008686_020 Hb_001951_100--Hb_008686_020 Hb_000367_020 Hb_000367_020 Hb_001951_100--Hb_000367_020 Hb_001951_100--Hb_004696_070 Hb_012490_010 Hb_012490_010 Hb_001951_100--Hb_012490_010 Hb_001951_100--Hb_000445_130 Hb_000340_360 Hb_000340_360 Hb_001951_100--Hb_000340_360 Hb_000154_130 Hb_000154_130 Hb_000445_130--Hb_000154_130 Hb_007012_040 Hb_007012_040 Hb_000445_130--Hb_007012_040 Hb_015183_080 Hb_015183_080 Hb_000445_130--Hb_015183_080 Hb_003124_270 Hb_003124_270 Hb_000445_130--Hb_003124_270 Hb_000445_130--Hb_000367_020 Hb_002918_320--Hb_008686_020 Hb_005765_040 Hb_005765_040 Hb_002918_320--Hb_005765_040 Hb_002918_320--Hb_004696_070 Hb_002918_320--Hb_001951_100 Hb_001561_010 Hb_001561_010 Hb_002918_320--Hb_001561_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.877474 8.80672 2.40107 4.22723 1.29364 1.48052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21599 0.854 0.823623 3.83575 4.79156

CAGE analysis