Hb_000473_160

Information

Type -
Description -
Location Contig473: 275756-288648
Sequence    

Annotation

kegg
ID sot:102596609
description uncharacterized LOC102596609
nr
ID XP_006361364.1
description PREDICTED: uncharacterized protein LOC102596609 [Solanum tuberosum]
swissprot
ID -
description -
trembl
ID I1I536
description Uncharacterized protein OS=Brachypodium distachyon GN=BRADI3G29975 PE=4 SV=1
Gene Ontology
ID GO:0003676
description reverse transcriptase family member

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000473_160 0.0 - - PREDICTED: uncharacterized protein LOC102596609 [Solanum tuberosum]
2 Hb_067472_010 0.1717420208 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
3 Hb_002013_030 0.1816313514 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
4 Hb_116784_020 0.187502592 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
5 Hb_000352_060 0.18886728 - - RNA-directed DNA polymerase [Arachis hypogaea]
6 Hb_011649_030 0.1899298083 - - hypothetical protein [Vitis hybrid cultivar]
7 Hb_001385_070 0.1915429653 - - hypothetical protein VITISV_019194 [Vitis vinifera]
8 Hb_002973_120 0.1919822083 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
9 Hb_000574_330 0.1981687085 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
10 Hb_002983_090 0.1994328583 - - Altered inheritance of mitochondria protein 32 [Glycine soja]
11 Hb_006405_040 0.1998140605 - - hypothetical protein VITISV_026680 [Vitis vinifera]
12 Hb_158534_010 0.2014808896 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
13 Hb_041813_040 0.2024157525 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
14 Hb_001468_040 0.2035485127 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
15 Hb_000968_070 0.2084453775 - - -
16 Hb_000237_170 0.2084849715 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
17 Hb_002030_050 0.2110689988 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
18 Hb_000027_230 0.2114876144 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_004312_020 0.2130044271 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001366_260 0.2162998333 - - T4.15 [Malus x robusta]

Gene co-expression network

sample Hb_000473_160 Hb_000473_160 Hb_067472_010 Hb_067472_010 Hb_000473_160--Hb_067472_010 Hb_002013_030 Hb_002013_030 Hb_000473_160--Hb_002013_030 Hb_116784_020 Hb_116784_020 Hb_000473_160--Hb_116784_020 Hb_000352_060 Hb_000352_060 Hb_000473_160--Hb_000352_060 Hb_011649_030 Hb_011649_030 Hb_000473_160--Hb_011649_030 Hb_001385_070 Hb_001385_070 Hb_000473_160--Hb_001385_070 Hb_067472_010--Hb_116784_020 Hb_001366_260 Hb_001366_260 Hb_067472_010--Hb_001366_260 Hb_001468_040 Hb_001468_040 Hb_067472_010--Hb_001468_040 Hb_011472_050 Hb_011472_050 Hb_067472_010--Hb_011472_050 Hb_000820_100 Hb_000820_100 Hb_067472_010--Hb_000820_100 Hb_067472_010--Hb_002013_030 Hb_002013_030--Hb_116784_020 Hb_002013_030--Hb_001366_260 Hb_007543_020 Hb_007543_020 Hb_002013_030--Hb_007543_020 Hb_002013_030--Hb_011649_030 Hb_002013_030--Hb_000820_100 Hb_116784_020--Hb_001366_260 Hb_116784_020--Hb_000352_060 Hb_116784_020--Hb_001468_040 Hb_000027_230 Hb_000027_230 Hb_116784_020--Hb_000027_230 Hb_116784_020--Hb_000820_100 Hb_000352_060--Hb_011649_030 Hb_001345_040 Hb_001345_040 Hb_000352_060--Hb_001345_040 Hb_000173_110 Hb_000173_110 Hb_000352_060--Hb_000173_110 Hb_000352_060--Hb_067472_010 Hb_000352_060--Hb_001468_040 Hb_003291_030 Hb_003291_030 Hb_011649_030--Hb_003291_030 Hb_011649_030--Hb_001385_070 Hb_127552_050 Hb_127552_050 Hb_011649_030--Hb_127552_050 Hb_041813_040 Hb_041813_040 Hb_011649_030--Hb_041813_040 Hb_000574_330 Hb_000574_330 Hb_011649_030--Hb_000574_330 Hb_001385_070--Hb_127552_050 Hb_000123_340 Hb_000123_340 Hb_001385_070--Hb_000123_340 Hb_001793_040 Hb_001793_040 Hb_001385_070--Hb_001793_040 Hb_001385_070--Hb_000574_330 Hb_004520_010 Hb_004520_010 Hb_001385_070--Hb_004520_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0393287 0.0093082 0.0304435 0.0179396 0.01103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0338097 0.15938

CAGE analysis