Hb_000475_020

Information

Type -
Description -
Location Contig475: 44230-60232
Sequence    

Annotation

kegg
ID rcu:RCOM_1506950
description short-chain dehydrogenase, putative
nr
ID XP_012074841.1
description PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
swissprot
ID A2RVM0
description Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1
trembl
ID A0A067KTE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08988 PE=4 SV=1
Gene Ontology
ID GO:0016491
description dehydrogenase reductase sdr family member on chromosome x-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44483: 32044-60281
cDNA
(Sanger)
(ID:Location)		 029_C23.ab1: 59876-60281

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000475_020 0.0 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
2 Hb_001811_120 0.0408970401 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
3 Hb_002471_210 0.0549191462 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
4 Hb_000250_070 0.0582714365 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
5 Hb_007849_020 0.063607245 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
6 Hb_002291_070 0.0648469546 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
7 Hb_147737_010 0.0668307412 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
8 Hb_000487_220 0.0675990858 - - eukaryotic translation elongation factor, putative [Ricinus communis]
9 Hb_000813_100 0.0770863193 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
10 Hb_000096_180 0.0772781326 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
11 Hb_006816_300 0.0784727383 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
12 Hb_007904_180 0.0787850591 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
13 Hb_003029_130 0.0790761402 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
14 Hb_015026_050 0.0821518929 - - XPA-binding protein, putative [Ricinus communis]
15 Hb_004037_030 0.0822989485 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
16 Hb_003847_120 0.0826201094 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_000029_320 0.0835142164 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
18 Hb_020665_030 0.0839736856 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010315_090 0.0848881058 - - suppressor of ty, putative [Ricinus communis]
20 Hb_002235_160 0.084994647 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]

Gene co-expression network

sample Hb_000475_020 Hb_000475_020 Hb_001811_120 Hb_001811_120 Hb_000475_020--Hb_001811_120 Hb_002471_210 Hb_002471_210 Hb_000475_020--Hb_002471_210 Hb_000250_070 Hb_000250_070 Hb_000475_020--Hb_000250_070 Hb_007849_020 Hb_007849_020 Hb_000475_020--Hb_007849_020 Hb_002291_070 Hb_002291_070 Hb_000475_020--Hb_002291_070 Hb_147737_010 Hb_147737_010 Hb_000475_020--Hb_147737_010 Hb_001811_120--Hb_002471_210 Hb_000487_220 Hb_000487_220 Hb_001811_120--Hb_000487_220 Hb_001811_120--Hb_000250_070 Hb_007904_180 Hb_007904_180 Hb_001811_120--Hb_007904_180 Hb_001811_120--Hb_002291_070 Hb_002471_210--Hb_007849_020 Hb_002471_210--Hb_002291_070 Hb_002471_210--Hb_000250_070 Hb_001322_210 Hb_001322_210 Hb_002471_210--Hb_001322_210 Hb_000250_070--Hb_007849_020 Hb_000250_070--Hb_002291_070 Hb_006816_300 Hb_006816_300 Hb_000250_070--Hb_006816_300 Hb_007849_020--Hb_006816_300 Hb_000227_380 Hb_000227_380 Hb_007849_020--Hb_000227_380 Hb_002105_080 Hb_002105_080 Hb_007849_020--Hb_002105_080 Hb_007849_020--Hb_002291_070 Hb_000780_220 Hb_000780_220 Hb_002291_070--Hb_000780_220 Hb_002291_070--Hb_001322_210 Hb_000329_130 Hb_000329_130 Hb_147737_010--Hb_000329_130 Hb_015026_050 Hb_015026_050 Hb_147737_010--Hb_015026_050 Hb_000343_210 Hb_000343_210 Hb_147737_010--Hb_000343_210 Hb_000567_010 Hb_000567_010 Hb_147737_010--Hb_000567_010 Hb_003124_130 Hb_003124_130 Hb_147737_010--Hb_003124_130 Hb_000531_090 Hb_000531_090 Hb_147737_010--Hb_000531_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0278 10.0166 3.72275 4.75402 14.5907 20.0402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.38896 2.94485 4.85965 5.86954 7.00208

CAGE analysis