Hb_000475_040

Information

Type transcription factor
Description TF Family: NAC
Location Contig475: 141153-145691
Sequence    

Annotation

kegg
ID rcu:RCOM_1326820
description transcription factor, putative
nr
ID XP_002520049.1
description transcription factor, putative [Ricinus communis]
swissprot
ID F4JN35
description Protein NTM1-like 9 OS=Arabidopsis thaliana GN=NTL9 PE=1 SV=1
trembl
ID B9S230
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1326820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000475_040 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_000086_340 0.1385238391 - - PREDICTED: uncharacterized protein LOC100253191 [Vitis vinifera]
3 Hb_149714_010 0.1533568808 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
4 Hb_000302_260 0.158620467 - - hypothetical protein [Bruguiera gymnorhiza]
5 Hb_127194_010 0.1663858944 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
6 Hb_001123_200 0.1681243433 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000210_010 0.1827429777 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
8 Hb_001377_360 0.1878654201 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
9 Hb_000029_080 0.1921246597 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
10 Hb_000019_040 0.1936797913 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
11 Hb_155599_010 0.1946551511 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
12 Hb_000011_050 0.1952572439 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
13 Hb_007943_050 0.1952580999 - - peroxiredoxin, putative [Ricinus communis]
14 Hb_001437_080 0.1956505099 transcription factor TF Family: TCP hypothetical protein JCGZ_05472 [Jatropha curcas]
15 Hb_088753_010 0.1984692885 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
16 Hb_000045_300 0.2012514224 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
17 Hb_080362_010 0.201377611 - - hypothetical protein JCGZ_14167 [Jatropha curcas]
18 Hb_004324_300 0.2022626033 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
19 Hb_002042_130 0.2024979282 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
20 Hb_000402_210 0.2029768047 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]

Gene co-expression network

sample Hb_000475_040 Hb_000475_040 Hb_000086_340 Hb_000086_340 Hb_000475_040--Hb_000086_340 Hb_149714_010 Hb_149714_010 Hb_000475_040--Hb_149714_010 Hb_000302_260 Hb_000302_260 Hb_000475_040--Hb_000302_260 Hb_127194_010 Hb_127194_010 Hb_000475_040--Hb_127194_010 Hb_001123_200 Hb_001123_200 Hb_000475_040--Hb_001123_200 Hb_000210_010 Hb_000210_010 Hb_000475_040--Hb_000210_010 Hb_000086_340--Hb_149714_010 Hb_000086_340--Hb_000302_260 Hb_000122_050 Hb_000122_050 Hb_000086_340--Hb_000122_050 Hb_030116_010 Hb_030116_010 Hb_000086_340--Hb_030116_010 Hb_155599_010 Hb_155599_010 Hb_000086_340--Hb_155599_010 Hb_149714_010--Hb_000122_050 Hb_149714_010--Hb_000302_260 Hb_149714_010--Hb_030116_010 Hb_000264_290 Hb_000264_290 Hb_149714_010--Hb_000264_290 Hb_002042_130 Hb_002042_130 Hb_000302_260--Hb_002042_130 Hb_000402_210 Hb_000402_210 Hb_000302_260--Hb_000402_210 Hb_028487_020 Hb_028487_020 Hb_000302_260--Hb_028487_020 Hb_189208_020 Hb_189208_020 Hb_000302_260--Hb_189208_020 Hb_088753_010 Hb_088753_010 Hb_000302_260--Hb_088753_010 Hb_000394_110 Hb_000394_110 Hb_127194_010--Hb_000394_110 Hb_000321_160 Hb_000321_160 Hb_127194_010--Hb_000321_160 Hb_000805_110 Hb_000805_110 Hb_127194_010--Hb_000805_110 Hb_004324_300 Hb_004324_300 Hb_127194_010--Hb_004324_300 Hb_002028_140 Hb_002028_140 Hb_127194_010--Hb_002028_140 Hb_003605_240 Hb_003605_240 Hb_001123_200--Hb_003605_240 Hb_001377_360 Hb_001377_360 Hb_001123_200--Hb_001377_360 Hb_000179_240 Hb_000179_240 Hb_001123_200--Hb_000179_240 Hb_000976_280 Hb_000976_280 Hb_001123_200--Hb_000976_280 Hb_002685_200 Hb_002685_200 Hb_001123_200--Hb_002685_200 Hb_001123_200--Hb_004324_300 Hb_007943_050 Hb_007943_050 Hb_000210_010--Hb_007943_050 Hb_000649_130 Hb_000649_130 Hb_000210_010--Hb_000649_130 Hb_006909_060 Hb_006909_060 Hb_000210_010--Hb_006909_060 Hb_001856_200 Hb_001856_200 Hb_000210_010--Hb_001856_200 Hb_000342_060 Hb_000342_060 Hb_000210_010--Hb_000342_060 Hb_000164_020 Hb_000164_020 Hb_000210_010--Hb_000164_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.16399 7.5443 5.23972 1.89047 0.250355 2.35421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.15847 5.86464 1.91317 1.66353 0.456517

CAGE analysis