Hb_000475_050

Information

Type -
Description -
Location Contig475: 150183-153118
Sequence    

Annotation

kegg
ID tcc:TCM_018243
description DNA/RNA polymerases superfamily protein
nr
ID XP_007032400.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061EEG7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000475_050 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_001282_030 0.2706481386 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
3 Hb_005016_110 0.2754800472 - - -
4 Hb_001188_120 0.2767908065 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
5 Hb_005896_010 0.2969918219 - - -
6 Hb_159198_010 0.302668777 - - hypothetical protein VITISV_033829 [Vitis vinifera]
7 Hb_002729_020 0.3087155045 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
8 Hb_000649_180 0.3130758996 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
9 Hb_003206_080 0.3158065343 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
10 Hb_003349_100 0.3162212665 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002656_010 0.316715852 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
12 Hb_118157_020 0.3212392496 - - hypothetical protein MTR_3g456110 [Medicago truncatula]
13 Hb_097021_010 0.3215607878 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
14 Hb_001096_020 0.3245670969 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Populus euphratica]
15 Hb_012092_080 0.3272865542 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
16 Hb_086607_010 0.3280922528 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_006683_030 0.3284335878 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
18 Hb_014324_010 0.3286916435 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
19 Hb_149515_010 0.3327016659 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
20 Hb_001103_050 0.3342171922 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_000475_050 Hb_000475_050 Hb_001282_030 Hb_001282_030 Hb_000475_050--Hb_001282_030 Hb_005016_110 Hb_005016_110 Hb_000475_050--Hb_005016_110 Hb_001188_120 Hb_001188_120 Hb_000475_050--Hb_001188_120 Hb_005896_010 Hb_005896_010 Hb_000475_050--Hb_005896_010 Hb_159198_010 Hb_159198_010 Hb_000475_050--Hb_159198_010 Hb_002729_020 Hb_002729_020 Hb_000475_050--Hb_002729_020 Hb_115656_010 Hb_115656_010 Hb_001282_030--Hb_115656_010 Hb_012092_080 Hb_012092_080 Hb_001282_030--Hb_012092_080 Hb_086607_010 Hb_086607_010 Hb_001282_030--Hb_086607_010 Hb_001523_030 Hb_001523_030 Hb_001282_030--Hb_001523_030 Hb_057451_040 Hb_057451_040 Hb_001282_030--Hb_057451_040 Hb_004212_040 Hb_004212_040 Hb_001282_030--Hb_004212_040 Hb_005016_110--Hb_002729_020 Hb_033594_050 Hb_033594_050 Hb_005016_110--Hb_033594_050 Hb_002585_060 Hb_002585_060 Hb_005016_110--Hb_002585_060 Hb_002815_040 Hb_002815_040 Hb_005016_110--Hb_002815_040 Hb_058095_030 Hb_058095_030 Hb_005016_110--Hb_058095_030 Hb_048476_070 Hb_048476_070 Hb_005016_110--Hb_048476_070 Hb_012753_010 Hb_012753_010 Hb_001188_120--Hb_012753_010 Hb_003186_040 Hb_003186_040 Hb_001188_120--Hb_003186_040 Hb_002791_020 Hb_002791_020 Hb_001188_120--Hb_002791_020 Hb_085083_020 Hb_085083_020 Hb_001188_120--Hb_085083_020 Hb_076795_010 Hb_076795_010 Hb_001188_120--Hb_076795_010 Hb_185058_020 Hb_185058_020 Hb_001188_120--Hb_185058_020 Hb_006683_030 Hb_006683_030 Hb_005896_010--Hb_006683_030 Hb_002656_010 Hb_002656_010 Hb_005896_010--Hb_002656_010 Hb_005896_010--Hb_159198_010 Hb_000840_040 Hb_000840_040 Hb_005896_010--Hb_000840_040 Hb_008749_090 Hb_008749_090 Hb_005896_010--Hb_008749_090 Hb_003517_010 Hb_003517_010 Hb_005896_010--Hb_003517_010 Hb_159198_010--Hb_000840_040 Hb_149515_010 Hb_149515_010 Hb_159198_010--Hb_149515_010 Hb_159198_010--Hb_003517_010 Hb_000067_030 Hb_000067_030 Hb_159198_010--Hb_000067_030 Hb_000141_010 Hb_000141_010 Hb_159198_010--Hb_000141_010 Hb_002740_170 Hb_002740_170 Hb_159198_010--Hb_002740_170 Hb_000832_010 Hb_000832_010 Hb_002729_020--Hb_000832_010 Hb_001871_030 Hb_001871_030 Hb_002729_020--Hb_001871_030 Hb_000136_080 Hb_000136_080 Hb_002729_020--Hb_000136_080 Hb_002729_020--Hb_002815_040 Hb_114121_010 Hb_114121_010 Hb_002729_020--Hb_114121_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0151061 0.0373796 0.0114877 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0514532 0.0481931 0.0573737

CAGE analysis