Hb_000477_010

Information

Type -
Description -
Location Contig477: 29409-34619
Sequence    

Annotation

kegg
ID pop:POPTR_0006s15950g
description POPTRDRAFT_561123; k transporter family protein
nr
ID XP_012078936.1
description PREDICTED: potassium channel AKT1-like [Jatropha curcas]
swissprot
ID Q38998
description Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2
trembl
ID B9H988
description K transporter family protein OS=Populus trichocarpa GN=POPTR_0006s15950g PE=4 SV=1
Gene Ontology
ID GO:0005249
description potassium channel akt1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44514: 31665-32467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000477_010 0.0 - - PREDICTED: potassium channel AKT1-like [Jatropha curcas]
2 Hb_002431_090 0.1089540722 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003835_030 0.1102286733 - - glycosyltransferase, partial [Arabidopsis thaliana]
4 Hb_002477_080 0.1269139494 - - hypothetical protein RCOM_0653450 [Ricinus communis]
5 Hb_000899_060 0.1311713782 - - PREDICTED: uncharacterized protein LOC105793631 [Gossypium raimondii]
6 Hb_008092_020 0.132891609 - - transcription factor, putative [Ricinus communis]
7 Hb_002000_130 0.1361388137 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
8 Hb_002598_020 0.1373754788 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
9 Hb_000816_050 0.1383006088 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
10 Hb_000537_090 0.1388294571 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001913_030 0.1395307334 - - ankyrin repeat protein [Bruguiera gymnorhiza]
12 Hb_005034_010 0.149369799 - - alcohol dehydrogenase, putative [Ricinus communis]
13 Hb_000028_460 0.1507096228 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
14 Hb_103541_010 0.1512389517 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
15 Hb_002335_010 0.1549214943 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
16 Hb_000090_020 0.1552970215 - - acyltransferase, putative [Ricinus communis]
17 Hb_001269_530 0.1555479927 - - ATP-binding cassette transporter, putative [Ricinus communis]
18 Hb_000732_100 0.1569587854 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
19 Hb_001143_140 0.1570452952 - - Aldehyde dehydrogenase, putative [Ricinus communis]
20 Hb_001013_050 0.1602278096 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_000477_010 Hb_000477_010 Hb_002431_090 Hb_002431_090 Hb_000477_010--Hb_002431_090 Hb_003835_030 Hb_003835_030 Hb_000477_010--Hb_003835_030 Hb_002477_080 Hb_002477_080 Hb_000477_010--Hb_002477_080 Hb_000899_060 Hb_000899_060 Hb_000477_010--Hb_000899_060 Hb_008092_020 Hb_008092_020 Hb_000477_010--Hb_008092_020 Hb_002000_130 Hb_002000_130 Hb_000477_010--Hb_002000_130 Hb_189034_010 Hb_189034_010 Hb_002431_090--Hb_189034_010 Hb_002431_090--Hb_002477_080 Hb_000816_050 Hb_000816_050 Hb_002431_090--Hb_000816_050 Hb_002431_090--Hb_003835_030 Hb_002431_090--Hb_008092_020 Hb_003835_030--Hb_008092_020 Hb_001013_050 Hb_001013_050 Hb_003835_030--Hb_001013_050 Hb_003835_030--Hb_002000_130 Hb_000589_330 Hb_000589_330 Hb_003835_030--Hb_000589_330 Hb_005034_010 Hb_005034_010 Hb_003835_030--Hb_005034_010 Hb_000472_020 Hb_000472_020 Hb_003835_030--Hb_000472_020 Hb_002477_080--Hb_000899_060 Hb_001823_070 Hb_001823_070 Hb_002477_080--Hb_001823_070 Hb_002477_080--Hb_000816_050 Hb_103541_010 Hb_103541_010 Hb_002477_080--Hb_103541_010 Hb_000028_460 Hb_000028_460 Hb_002477_080--Hb_000028_460 Hb_037684_010 Hb_037684_010 Hb_000899_060--Hb_037684_010 Hb_002374_520 Hb_002374_520 Hb_000899_060--Hb_002374_520 Hb_002598_020 Hb_002598_020 Hb_000899_060--Hb_002598_020 Hb_000090_020 Hb_000090_020 Hb_000899_060--Hb_000090_020 Hb_000899_060--Hb_103541_010 Hb_174101_010 Hb_174101_010 Hb_008092_020--Hb_174101_010 Hb_008092_020--Hb_001013_050 Hb_008092_020--Hb_000028_460 Hb_008092_020--Hb_002000_130 Hb_008092_020--Hb_000472_020 Hb_003226_030 Hb_003226_030 Hb_002000_130--Hb_003226_030 Hb_002000_130--Hb_000028_460 Hb_001143_140 Hb_001143_140 Hb_002000_130--Hb_001143_140 Hb_000614_190 Hb_000614_190 Hb_002000_130--Hb_000614_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.3623 0.278454 1.50762 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0815034 0.0160328 0 0.573593 0.713387

CAGE analysis