Hb_000477_030

Information

Type -
Description -
Location Contig477: 35597-50068
Sequence    

Annotation

kegg
ID rcu:RCOM_0826620
description Boron transporter, putative
nr
ID XP_012078935.1
description PREDICTED: boron transporter 4-like [Jatropha curcas]
swissprot
ID Q9XI23
description Boron transporter 4 OS=Arabidopsis thaliana GN=BOR4 PE=2 SV=1
trembl
ID B9STQ3
description Boron transporter, putative OS=Ricinus communis GN=RCOM_0826620 PE=4 SV=1
Gene Ontology
ID GO:0016021
description boron transporter 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44515: 45722-49853 , PASA_asmbl_44516: 49874-50043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000477_030 0.0 - - PREDICTED: boron transporter 4-like [Jatropha curcas]
2 Hb_005505_050 0.0551838045 - - PREDICTED: uncharacterized protein LOC105639309 isoform X2 [Jatropha curcas]
3 Hb_106552_050 0.0768388704 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
4 Hb_001083_050 0.0790684163 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
5 Hb_002784_050 0.0797546462 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
6 Hb_001541_260 0.0833087867 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
7 Hb_009252_100 0.0843587904 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
8 Hb_031527_100 0.0861690292 - - conserved hypothetical protein [Ricinus communis]
9 Hb_054865_100 0.0893595647 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
10 Hb_008803_090 0.0898055838 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
11 Hb_000261_220 0.0899387912 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
12 Hb_002301_220 0.0901824476 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
13 Hb_001623_420 0.0907888148 - - nucleotide binding protein, putative [Ricinus communis]
14 Hb_001504_150 0.0934579245 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
15 Hb_001439_150 0.0953412693 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
16 Hb_000327_120 0.0955265256 - - FGFR1 oncogene partner, putative [Ricinus communis]
17 Hb_000465_470 0.0967045187 - - unknown [Picea sitchensis]
18 Hb_000181_120 0.0969383373 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
19 Hb_022250_030 0.0974824064 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003029_030 0.0975698971 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000477_030 Hb_000477_030 Hb_005505_050 Hb_005505_050 Hb_000477_030--Hb_005505_050 Hb_106552_050 Hb_106552_050 Hb_000477_030--Hb_106552_050 Hb_001083_050 Hb_001083_050 Hb_000477_030--Hb_001083_050 Hb_002784_050 Hb_002784_050 Hb_000477_030--Hb_002784_050 Hb_001541_260 Hb_001541_260 Hb_000477_030--Hb_001541_260 Hb_009252_100 Hb_009252_100 Hb_000477_030--Hb_009252_100 Hb_000034_100 Hb_000034_100 Hb_005505_050--Hb_000034_100 Hb_054865_100 Hb_054865_100 Hb_005505_050--Hb_054865_100 Hb_002686_250 Hb_002686_250 Hb_005505_050--Hb_002686_250 Hb_005505_050--Hb_001541_260 Hb_000327_120 Hb_000327_120 Hb_005505_050--Hb_000327_120 Hb_008803_090 Hb_008803_090 Hb_106552_050--Hb_008803_090 Hb_000976_320 Hb_000976_320 Hb_106552_050--Hb_000976_320 Hb_001926_030 Hb_001926_030 Hb_106552_050--Hb_001926_030 Hb_002192_080 Hb_002192_080 Hb_106552_050--Hb_002192_080 Hb_000808_250 Hb_000808_250 Hb_106552_050--Hb_000808_250 Hb_004055_150 Hb_004055_150 Hb_106552_050--Hb_004055_150 Hb_000261_220 Hb_000261_220 Hb_001083_050--Hb_000261_220 Hb_001083_050--Hb_009252_100 Hb_057878_010 Hb_057878_010 Hb_001083_050--Hb_057878_010 Hb_005883_010 Hb_005883_010 Hb_001083_050--Hb_005883_010 Hb_001171_070 Hb_001171_070 Hb_001083_050--Hb_001171_070 Hb_022250_030 Hb_022250_030 Hb_002784_050--Hb_022250_030 Hb_002685_140 Hb_002685_140 Hb_002784_050--Hb_002685_140 Hb_000676_050 Hb_000676_050 Hb_002784_050--Hb_000676_050 Hb_001635_170 Hb_001635_170 Hb_002784_050--Hb_001635_170 Hb_019962_030 Hb_019962_030 Hb_002784_050--Hb_019962_030 Hb_002784_050--Hb_000327_120 Hb_144787_030 Hb_144787_030 Hb_001541_260--Hb_144787_030 Hb_000236_100 Hb_000236_100 Hb_001541_260--Hb_000236_100 Hb_000139_250 Hb_000139_250 Hb_001541_260--Hb_000139_250 Hb_000465_470 Hb_000465_470 Hb_001541_260--Hb_000465_470 Hb_000032_490 Hb_000032_490 Hb_001541_260--Hb_000032_490 Hb_000946_120 Hb_000946_120 Hb_001541_260--Hb_000946_120 Hb_001040_040 Hb_001040_040 Hb_009252_100--Hb_001040_040 Hb_009252_100--Hb_106552_050 Hb_002326_020 Hb_002326_020 Hb_009252_100--Hb_002326_020 Hb_001357_380 Hb_001357_380 Hb_009252_100--Hb_001357_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1089 8.19801 6.97875 4.14739 15.1593 8.95381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.19497 6.92825 8.71415 3.43441 2.84422

CAGE analysis