Hb_000477_040

Information

Type -
Description -
Location Contig477: 68249-69563
Sequence    

Annotation

kegg
ID rcu:RCOM_0826500
description hypothetical protein
nr
ID XP_002529370.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ZP41
description EG45-like domain containing protein OS=Citrus jambhiri GN=CjBAp12 PE=1 SV=1
trembl
ID B9STQ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0826500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44517: 68328-69333 , PASA_asmbl_44518: 69347-69522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000477_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005470_030 0.1157963077 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
3 Hb_003878_050 0.1342173587 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
4 Hb_000849_120 0.1524947291 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
5 Hb_000110_060 0.1548032749 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
6 Hb_000465_320 0.1561272155 - - PREDICTED: nudix hydrolase 8 [Jatropha curcas]
7 Hb_001904_050 0.1573379684 - - alpha-tubulin 1 [Hevea brasiliensis]
8 Hb_002284_220 0.1601273459 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
9 Hb_001369_630 0.1602644336 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
10 Hb_000935_040 0.160371164 - - Uncharacterized protein isoform 2 [Theobroma cacao]
11 Hb_000703_280 0.1690498073 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
12 Hb_000210_100 0.1717740962 - - pepsin A, putative [Ricinus communis]
13 Hb_025466_010 0.174574432 - - unnamed protein product [Vitis vinifera]
14 Hb_033152_120 0.1766626029 - - PREDICTED: la-related protein 6C [Jatropha curcas]
15 Hb_007441_080 0.1775248885 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
16 Hb_025466_020 0.1776927103 - - tubulin beta-6 [Brassica oleracea var. italica]
17 Hb_031527_110 0.1790402979 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
18 Hb_002007_320 0.1799998525 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
19 Hb_001481_130 0.1802767077 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000789_120 0.1811880713 - - PREDICTED: derlin-1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000477_040 Hb_000477_040 Hb_005470_030 Hb_005470_030 Hb_000477_040--Hb_005470_030 Hb_003878_050 Hb_003878_050 Hb_000477_040--Hb_003878_050 Hb_000849_120 Hb_000849_120 Hb_000477_040--Hb_000849_120 Hb_000110_060 Hb_000110_060 Hb_000477_040--Hb_000110_060 Hb_000465_320 Hb_000465_320 Hb_000477_040--Hb_000465_320 Hb_001904_050 Hb_001904_050 Hb_000477_040--Hb_001904_050 Hb_002284_220 Hb_002284_220 Hb_005470_030--Hb_002284_220 Hb_005470_030--Hb_000110_060 Hb_002486_020 Hb_002486_020 Hb_005470_030--Hb_002486_020 Hb_005470_030--Hb_000849_120 Hb_020437_020 Hb_020437_020 Hb_005470_030--Hb_020437_020 Hb_026889_040 Hb_026889_040 Hb_003878_050--Hb_026889_040 Hb_000703_280 Hb_000703_280 Hb_003878_050--Hb_000703_280 Hb_004158_020 Hb_004158_020 Hb_003878_050--Hb_004158_020 Hb_001369_630 Hb_001369_630 Hb_003878_050--Hb_001369_630 Hb_000935_040 Hb_000935_040 Hb_003878_050--Hb_000935_040 Hb_000849_120--Hb_000110_060 Hb_000684_390 Hb_000684_390 Hb_000849_120--Hb_000684_390 Hb_004326_010 Hb_004326_010 Hb_000849_120--Hb_004326_010 Hb_000181_460 Hb_000181_460 Hb_000849_120--Hb_000181_460 Hb_009252_010 Hb_009252_010 Hb_000849_120--Hb_009252_010 Hb_005348_110 Hb_005348_110 Hb_000849_120--Hb_005348_110 Hb_002615_030 Hb_002615_030 Hb_000110_060--Hb_002615_030 Hb_003371_070 Hb_003371_070 Hb_000110_060--Hb_003371_070 Hb_001619_060 Hb_001619_060 Hb_000110_060--Hb_001619_060 Hb_000110_060--Hb_000181_460 Hb_021943_090 Hb_021943_090 Hb_000110_060--Hb_021943_090 Hb_003453_050 Hb_003453_050 Hb_000465_320--Hb_003453_050 Hb_031527_110 Hb_031527_110 Hb_000465_320--Hb_031527_110 Hb_000107_510 Hb_000107_510 Hb_000465_320--Hb_000107_510 Hb_011606_020 Hb_011606_020 Hb_000465_320--Hb_011606_020 Hb_001481_130 Hb_001481_130 Hb_000465_320--Hb_001481_130 Hb_001904_050--Hb_031527_110 Hb_006711_090 Hb_006711_090 Hb_001904_050--Hb_006711_090 Hb_000742_020 Hb_000742_020 Hb_001904_050--Hb_000742_020 Hb_154038_020 Hb_154038_020 Hb_001904_050--Hb_154038_020 Hb_007441_080 Hb_007441_080 Hb_001904_050--Hb_007441_080 Hb_000181_350 Hb_000181_350 Hb_001904_050--Hb_000181_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68832 3.13444 20.2678 40.2202 1.66195 0.818272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.76975 8.77018 22.5305 7.34013 26.2674

CAGE analysis